PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1696s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 445aa    MW: 49377.6 Da    PI: 5.939
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1696s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.86.5e-1028444315374
                 GRAS  15 gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                          ++  laq +Larl+++ +++++      p++R+a+y+teAL++ l++     +++ pps ++++n + ++aa+++fse+sP+l+f ++ta
  Araha.1696s0002.1.p  84 NNPVLAQGILARLNHNLNNNDTnnnpkpPFHRAASYITEALHSLLQD-----SSSSPPSLSPPQNLIFRIAAYRAFSETSPFLQFVNFTA 168
                          56669***********6666644789999******************.....78889999999*************************** PP

                 GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvak 184
                          Nq+Ile++eg +r+Hi+Dfdi++G+QW++L+q+La +R+  +++psl+iT+++sp+++ ++ el+ t+e+L++fA e+gv+fe+++l ++
  Araha.1696s0002.1.p 169 NQTILESFEGFDRIHIVDFDIGYGGQWASLIQELAgKRNrsSSAPSLKITAFASPSTVsDEFELRFTEENLRSFAGETGVSFEIELLNME 258
                          ***********************************85556699*************9999***************************777 PP

                 GRAS 185 rledleleeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfds 270
                           l + +++ +   r +++Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+ n+++F +++++al+yy++l++s
  Araha.1696s0002.1.p 259 ILLNPTYWPIsllRSSEKEAIAVNLPISSIVSG--------YLPLILRFLKQISPNVVVCSDRSCDRnNDAPFPNGVINALQYYTSLLES 340
                          66666666651116666*********9655544........5677**********************99********************* PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgs 357
                          l+++  +++e+++++Er++++++i+++++++ ++    +++   Wr+ ++++GF+pv+ls++a++qa++ll++ +++g+++e++   s s
  Araha.1696s0002.1.p 341 LDSGNLNNAEAASSIERFCVQPSIQKLLTNRYRW----MQRSPPWRSLFGQCGFSPVTLSQTAETQAEYLLQRNPMRGFHLEKRqssSSS 426
                          *88877999*************************....9999****************************************66555889 PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          lvl+W++++Lv+vSaW+
  Araha.1696s0002.1.p 427 LVLCWQRKELVTVSAWK 443
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.34544420IPR005202Transcription factor GRAS
PfamPF035142.2E-9984443IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MPLPFEQFQG KGVLGFLDSS SSPGYKIWAN PEKLHGRVEV EEDLCFIVNN GGFSEPTSVL  60
DSVRSPSPFV SSSTTTLSSS HGDNNPVLAQ GILARLNHNL NNNDTNNNPK PPFHRAASYI  120
TEALHSLLQD SSSSPPSLSP PQNLIFRIAA YRAFSETSPF LQFVNFTANQ TILESFEGFD  180
RIHIVDFDIG YGGQWASLIQ ELAGKRNRSS SAPSLKITAF ASPSTVSDEF ELRFTEENLR  240
SFAGETGVSF EIELLNMEIL LNPTYWPISL LRSSEKEAIA VNLPISSIVS GYLPLILRFL  300
KQISPNVVVC SDRSCDRNND APFPNGVINA LQYYTSLLES LDSGNLNNAE AASSIERFCV  360
QPSIQKLLTN RYRWMQRSPP WRSLFGQCGF SPVTLSQTAE TQAEYLLQRN PMRGFHLEKR  420
QSSSSSLVLC WQRKELVTVS AWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3511244339375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1696s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1622950.0AL162295.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T4C21.
GenBankAY0640620.0AY064062.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankAY0963720.0AY096372.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881462.10.0scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLD7LRS90.0D7LRS9_ARALL; Scarecrow transcription factor family protein
STRINGfgenesh2_kg.5__2529__AT3G60630.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150661619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]