PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17146s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 296aa    MW: 32500.3 Da    PI: 6.7955
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17146s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.37.5e-17217253135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cg ++  Tp++Rrgpdg++tLCnaCGl+++ kg+
  Araha.17146s0001.1.p 217 CRHCGISEksTPMMRRGPDGPRTLCNACGLMWANKGT 253
                           *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.5E-1373108IPR010399Tify domain
PROSITE profilePS5132014.21773108IPR010399Tify domain
PfamPF062002.9E-1278107IPR010399Tify domain
PfamPF062033.0E-15141183IPR010402CCT domain
PROSITE profilePS5101712.898141183IPR010402CCT domain
PROSITE profilePS501149.011211259IPR000679Zinc finger, GATA-type
SMARTSM004017.5E-10211274IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-13213276No hitNo description
Gene3DG3DSA:3.30.50.101.7E-15216258IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440217244IPR000679Zinc finger, GATA-type
CDDcd002026.87E-16217266No hitNo description
PfamPF003208.1E-15217253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDELHGSNGR MHIGVAQDPM HVQYEHHGLH HIDNGNGMMD EHTDGGMDEG VETDIPSHPG  60
NAADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ AVLLLLGGRE VPQTLPTSLG  120
SPHQINRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF  180
TSAKSSNDDS GSTGSDWGSN QSWAIEGTET QKPEVLCRHC GISEKSTPMM RRGPDGPRTL  240
CNACGLMWAN KGTLRDLSKV PPPQTPQHLP VNKNEDANLE ADQMIEVAGD ISNSQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.17146s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0428170.0AY042817.1 Arabidopsis thaliana Unknown protein (MXL8.2) mRNA, complete cds.
GenBankAY0646280.0AY064628.1 Arabidopsis thaliana unknown protein (MXL8.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889066.10.0GATA transcription factor 24 isoform X2
SwissprotQ8GXL70.0GAT24_ARATH; GATA transcription factor 24
TrEMBLD7L0070.0D7L007_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__2338__AT3G21175.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.20.0ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]