PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.17241s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 232aa MW: 26383.1 Da PI: 10.3682

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.17241s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.8	2e-18	130	217	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k +++s+v+ +l lp +f+++h gk+ + +tl de+g+++e + rk++ l++GW +F+ a++L gD++vF+l++r+ Araha.17241s0002.1.p 130 FVKSMLQSHVSGGFWLGLPVQFCRSHLGKQ--DGVITLIDEEGEEYETIYLARKNG----LSGGWMGFAVAHNLAFGDTLVFELVHRTA 212 89**********************6663..448***********667776....***********************9999 PP E..EEEE CS B3 90 felvvkv 96 f +v + Araha.17241s0002.1.p 213 F--KVYI 217 9..5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.16E-24	123	220	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.6E-19	125	219	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.02E-25	128	219	No hit	No description
PROSITE profile	PS50863	12.083	130	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-15	130	218	IPR003340	B3 DNA binding domain
SMART	SM01019	2.9E-25	130	221	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MVVAKQSNYE EFRLKRVEEN KKRMEALNLQ KLSQNLNSTS VKNSPMKKRS IPRTPEKQMV 60 IVRRSSRISN SSSIPVYREV DVQRIQIRRR GLSKRRDLSN RVYVSEEIRE EAISRAEKFQ 120 DELGSGYPSF VKSMLQSHVS GGFWLGLPVQ FCRSHLGKQD GVITLIDEEG EEYETIYLAR 180 KNGLSGGWMG FAVAHNLAFG DTLVFELVHR TAFKVYITRV GSSGESSKDM S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.17241s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007647	2e-80	AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
GenBank	CP002688	2e-80	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879833.1	1e-154	B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	1e-134	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	D7MRH4	1e-144	D7MRH4_ARALL; Transcriptional factor B3 family protein
STRING	fgenesh1_pm.C_scaffold_8000473	1e-145	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-117	B3 family protein

Link Out ? help Back to Top
Phytozome	Araha.17241s0002.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]