PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17406s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BES1
Protein Properties Length: 314aa    MW: 33819.7 Da    PI: 8.4835
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17406s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822218.61.4e-6781482145
                DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 
                           +sgr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+vedDGttyrkg+kp+ ++++ g+ ++ s+
  Araha.17406s0004.1.p   8 SSGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGFKPP-ASDISGTPTNFST 95 
                           89*************************************************************************.************* PP

                DUF822  91 esslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145
                           +ss+q s++ssa++sp++sy+ sp sssfpsps+ d ++++    llp+l++ ++
  Araha.17406s0004.1.p  96 NSSIQPSPQSSAFPSPAPSYHGSPVSSSFPSPSRCDGNPSS--YLLLPFLHNIAS 148
                           **************************************887..899999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.2E-628132IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
GGGGGGSSSG RTPTWKEREN NKKRERRRRA ITAKIYSGLR AQGNYKLPKH CDNNEVLKAL  60
CLEAGWIVED DGTTYRKGFK PPASDISGTP TNFSTNSSIQ PSPQSSAFPS PAPSYHGSPV  120
SSSFPSPSRC DGNPSSYLLL PFLHNIASSI PANLPPLRIS NSAPVTPPLS SPTSRGSKRK  180
LTSEQLPNGG SLHVLRHPLF AISAPSSPTR RAGHQTPPTI PECDESEEDS IEDSGRWINF  240
QSTAPTSPTF NLVQQTSMAI DMKRSDWGMS GMNGRVTEFE FENGTVKPWE GEMIHEVGVE  300
DLELTLGGTK ARC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-261189372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-261189372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-261189372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-261189372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00474DAPTransfer from AT4G36780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.17406s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0503940.0AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
GenBankAY0973570.0AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866992.10.0BES1/BZR1 homolog protein 2
SwissprotQ94A430.0BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A178V2S60.0A0A178V2S6_ARATH; BEH2
STRINGscaffold_700428.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.13e-97BES1/BZR1 homolog 2