PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17420s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 562aa    MW: 62586.4 Da    PI: 7.4626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17420s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014280302123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y C++CgksF  +  L +H r+H
  Araha.17420s0008.1.p 280 YDCKICGKSFVCSQALGNHKRVH 302
                           88*********999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.3284106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78384111IPR007087Zinc finger, C2H2
PfamPF139122.7E-784108IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-1085106No hitNo description
Gene3DG3DSA:3.30.160.605.5E-585106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-5178205No hitNo description
SMARTSM003550.33180202IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-7180204IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.468180207IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-10275302No hitNo description
Gene3DG3DSA:3.30.160.606.8E-6280302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.044280302IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-5280304IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.133280307IPR007087Zinc finger, C2H2
PROSITE patternPS000280282302IPR007087Zinc finger, C2H2
SuperFamilySSF576674.42E-5499533No hitNo description
PROSITE profilePS501579.681508535IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-4508531IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035566508530IPR015880Zinc finger, C2H2-like
PfamPF139120.0014511533IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MDEAAMSLVM FSEQVYDFDL PPNDDDDSMD LDQLTPIQEK ILDCVEWILE LREMISHSGF  60
EKSTTCSDVV AAQALPKLQS NSSRKCNICG KSFGCYQALG GHQRVHRPIR GKLARKREYT  120
EDDNSLFESS DAKKIVSKPS KFEVSKEEKI LDCVDSKQGF SELLPRKSKS RKRPESSSCY  180
ECKICGKSFG CYQGLGGHTK LHRSMKGQLT RTQDDSSLLD SSQAKKIVSE PSSFEVSPGE  240
DILHCVELKQ DFSELLSHSG AFPSTLRSNL QKKTQSKSSY DCKICGKSFV CSQALGNHKR  300
VHRPIRGKLA SERKYTEDYN PLSDSVEAKK IVLEPSIFEV SPDEKSLHCV ELKQDFGELL  360
AHSGFDKSIS CSNTRFIPLP SSLRSKSHSN ISIKGKLTRK NENTEDGNSL FGNIVTQPSS  420
FEVSQEEKIF QCVEQKLEFH ELLAHSGFDK SSTCSKTRFT ALPSAPDDKK SVSQLSSFES  480
SVDENILHRV EQKLDFSKQL AHSGFDNYRF KICGKSFVCS QALGGHQKLH RSEDGNTLSG  540
MTDSEASKIV SQPSSYKSQG I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.17420s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877174.20.0zinc finger protein 709
TrEMBLD7LNX80.0D7LNX8_ARALL; Uncharacterized protein
STRINGscaffold_500944.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.11e-132C2H2 family protein