PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.17508s0006.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YB

Protein Properties

Length: 242aa MW: 26492.8 Da PI: 3.7786

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.17508s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	32.3	2.4e-10	3	58	37	92
NF-YB 37 ecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 e + fi +++s a+d c+ +r+t+++dd++ al ++ f +++eplk+ l+ +++ Araha.17508s0006.1.p 3 ESARIFIHYLSSTANDFCKDARRQTMKADDVFKALEEMDFSEFLEPLKASLEDFKK 58 56677**********************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.49E-12	2	58	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.6E-16	2	57	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
FSESARIFIH YLSSTANDFC KDARRQTMKA DDVFKALEEM DFSEFLEPLK ASLEDFKKKI 60 AGKKAGGGAA SKPAGGAASK SAGSTASKPK ETKKRKQEGP STQKGARKCK IDEETNKNDE 120 ENENDNTEEE NGNDEEDEND DENTEENGND EENENDNTEE EHGNDEEDAN DDENTEENEN 180 DEENEKEDEG NSMEENGNES EESGNEDHSM EENGSGDGED NENEDGSGSG SGEEVEGDED 240 E*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.17508s0006.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT004083	1e-170	BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023640708.1	8e-62	DNA polymerase epsilon subunit 3
TrEMBL	Q9ZQH2	1e-57	Q9ZQH2_ARATH; Nuclear factor Y, subunit B11
STRING	AT2G27470.1	2e-58	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12007	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	6e-41	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Araha.17508s0006.1.p