PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17613s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CAMTA
Protein Properties Length: 1060aa    MW: 118114 Da    PI: 6.3868
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17613s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1188.37.8e-59191362118
                  CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                           l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e
  Araha.17613s0007.1.p  19 LSEaQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGE 107
                           45559************************************************************************************ PP

                  CG-1  90 enptfqrrcywlLeeelekivlvhylevk 118
                           +n++fqrrcyw+Le++l +iv+vhylevk
  Araha.17613s0007.1.p 108 DNENFQRRCYWMLEQDLMHIVFVHYLEVK 136
                           **************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.27515141IPR005559CG-1 DNA-binding domain
SMARTSM010763.6E-8718136IPR005559CG-1 DNA-binding domain
PfamPF038598.5E-5221135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812966.72E-13472556IPR014756Immunoglobulin E-set
SuperFamilySSF484031.13E-19646764IPR020683Ankyrin repeat-containing domain
PfamPF127961.4E-8649730IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029720.022653764IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-18654765IPR020683Ankyrin repeat-containing domain
CDDcd002042.24E-15659762No hitNo description
SMARTSM002481000670699IPR002110Ankyrin repeat
PROSITE profilePS500889.458670702IPR002110Ankyrin repeat
SMARTSM002480.0029703732IPR002110Ankyrin repeat
PROSITE profilePS5008810.873703735IPR002110Ankyrin repeat
SMARTSM000150.32878900IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.56E-8879928IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.858880908IPR000048IQ motif, EF-hand binding site
PfamPF006120.002880899IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092901923IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304902926IPR000048IQ motif, EF-hand binding site
PfamPF006124.7E-4904923IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1060 aa     Download sequence    Send to blast
MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML  120
EQDLMHIVFV HYLEVKGNRM STGGTKENHS NSLSGTGSVN FDSTATRSSI LSPLCEDADS  180
GDSRQASSSL QQNPEPQTVV PQIMHHQNAS TMNSYNTTSV LGNRDGWTSA PGIGIVSQVH  240
GNRVKESNSQ RSGDVPAWDA SFENSLARCQ NLPYNAPLTQ TQPSTIGLIP MEGKTEKGSL  300
LTSEHLRNPL QNQVNWQIPV QESVPLQKWP MDSHSGMTDA TDLALFGQGA HENFGTFSSL  360
LGSQNQQPSI FQAPFTNNEA AYIPKLGPED LIYEASANQT LPLRKALLKK EDSLKKVDSF  420
SRWVSQELGE MEDLQMQSSS GGIAWTSVEC ENAAAGSSLS PSLSEDQRFT MIDFWPKWTQ  480
TDSEVEVMVI GTFLLSPQEV TSYSWSCMFG EVEVPADILV DGVLCCHAPP HEVGRVPFYI  540
TCSDRFSCSE VREFDFLPGS TTKLNATDIY GANTIETSLH VRFENLLALR SSVQEHHVFE  600
NVGEKRRKIS KIMLLKDEKE SLLPGTVEKD LTELEAKERL IREEFENKLC LWLIHKVTEE  660
GKGPNILDED GQGVLHLAAA LGYDWAIKPI LAAGVSINFR DANGWSALHW AAFSGREDTV  720
AVLVSLGADA GALADPSPEH PLGKTAADLA YGNGHRGISG FLAESSLTSY LEKLTVDAKE  780
NSSADSSGAK AVLTVAERTA TPMSYGDVPE TLSMKDSLTA VFNATQAADR LHQVFRMQSF  840
QRKQLSELGG DNKFDISDEL AVSFAAAKTK KPGHSNGAVH AAAVQIQKKY RGWKKRKEFL  900
LIRQRIVKIQ AHVRGHQVRK QYRAIIWSVG LLEKIILRWR RKGSGLRGFK RDTITKPTEP  960
VCPAPQEDDY DFLKEGRKQT EERLKKALTR VKSMAQYPEA RAQYRRLLTV VEGFRENEAS  1020
SSSALKNNTE EAANYNEEDD LIDIDSLLDD DTFMSLAFE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.17613s0007.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2294030.0AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBankBT0108740.0BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883660.10.0calmodulin-binding transcription activator 2 isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLD7MR880.0D7MR88_ARALL; Calmodulin-binding protein
STRINGscaffold_803130.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]