PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.17613s0007.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

CAMTA

Protein Properties

Length: 1056aa MW: 117586 Da PI: 6.3868

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.17613s0007.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	188.3	7.8e-59	19	136	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e Araha.17613s0007.2.p 19 LSEaQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGE 107 45559********************************************************************************** PP CG-1 90 enptfqrrcywlLeeelekivlvhylevk 118 +n++fqrrcyw+Le++l +iv+vhylevk Araha.17613s0007.2.p 108 DNENFQRRCYWMLEQDLMHIVFVHYLEVK 136 ************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	86.275	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.6E-87	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.4E-52	21	135	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	6.72E-13	468	552	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.12E-19	642	760	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.4E-8	645	726	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	20.022	649	760	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-18	650	761	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.23E-15	655	758	No hit	No description
SMART	SM00248	1000	666	695	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.458	666	698	IPR002110	Ankyrin repeat
SMART	SM00248	0.0029	699	728	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.873	699	731	IPR002110	Ankyrin repeat
SMART	SM00015	0.32	874	896	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	9.56E-8	875	924	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00612	0.002	876	895	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.858	876	904	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0092	897	919	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.304	898	922	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.6E-4	900	919	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1056 aa Download sequence Send to blast
MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML 120 EQDLMHIVFV HYLEVKGNRM STGGTKENHS NSLSGTGSVN FDSTATRSSI LSPLCEDADS 180 GDSRQASSSL QQNPEPQTVV PQIMHHQNAS TMNSYNTTSV LGNRDGWTSA PGIGIVSQVH 240 GNRVKESNSQ RSGDVPAWDA SFENSLARCQ NLPYNAPLTQ TQPSTIGLIP MEGKTEKGSL 300 LTSEHLRNPL QNQIPVQESV PLQKWPMDSH SGMTDATDLA LFGQGAHENF GTFSSLLGSQ 360 NQQPSIFQAP FTNNEAAYIP KLGPEDLIYE ASANQTLPLR KALLKKEDSL KKVDSFSRWV 420 SQELGEMEDL QMQSSSGGIA WTSVECENAA AGSSLSPSLS EDQRFTMIDF WPKWTQTDSE 480 VEVMVIGTFL LSPQEVTSYS WSCMFGEVEV PADILVDGVL CCHAPPHEVG RVPFYITCSD 540 RFSCSEVREF DFLPGSTTKL NATDIYGANT IETSLHVRFE NLLALRSSVQ EHHVFENVGE 600 KRRKISKIML LKDEKESLLP GTVEKDLTEL EAKERLIREE FENKLCLWLI HKVTEEGKGP 660 NILDEDGQGV LHLAAALGYD WAIKPILAAG VSINFRDANG WSALHWAAFS GREDTVAVLV 720 SLGADAGALA DPSPEHPLGK TAADLAYGNG HRGISGFLAE SSLTSYLEKL TVDAKENSSA 780 DSSGAKAVLT VAERTATPMS YGDVPETLSM KDSLTAVFNA TQAADRLHQV FRMQSFQRKQ 840 LSELGGDNKF DISDELAVSF AAAKTKKPGH SNGAVHAAAV QIQKKYRGWK KRKEFLLIRQ 900 RIVKIQAHVR GHQVRKQYRA IIWSVGLLEK IILRWRRKGS GLRGFKRDTI TKPTEPVCPA 960 PQEDDYDFLK EGRKQTEERL KKALTRVKSM AQYPEARAQY RRLLTVVEGF RENEASSSSA 1020 LKNNTEEAAN YNEEDDLIDI DSLLDDDTFM SLAFE*

Sequence ? help Back to Top

Protein Sequence Length: 1056 aa Download sequence Send to blast

MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML  120
EQDLMHIVFV HYLEVKGNRM STGGTKENHS NSLSGTGSVN FDSTATRSSI LSPLCEDADS  180
GDSRQASSSL QQNPEPQTVV PQIMHHQNAS TMNSYNTTSV LGNRDGWTSA PGIGIVSQVH  240
GNRVKESNSQ RSGDVPAWDA SFENSLARCQ NLPYNAPLTQ TQPSTIGLIP MEGKTEKGSL  300
LTSEHLRNPL QNQIPVQESV PLQKWPMDSH SGMTDATDLA LFGQGAHENF GTFSSLLGSQ  360
NQQPSIFQAP FTNNEAAYIP KLGPEDLIYE ASANQTLPLR KALLKKEDSL KKVDSFSRWV  420
SQELGEMEDL QMQSSSGGIA WTSVECENAA AGSSLSPSLS EDQRFTMIDF WPKWTQTDSE  480
VEVMVIGTFL LSPQEVTSYS WSCMFGEVEV PADILVDGVL CCHAPPHEVG RVPFYITCSD  540
RFSCSEVREF DFLPGSTTKL NATDIYGANT IETSLHVRFE NLLALRSSVQ EHHVFENVGE  600
KRRKISKIML LKDEKESLLP GTVEKDLTEL EAKERLIREE FENKLCLWLI HKVTEEGKGP  660
NILDEDGQGV LHLAAALGYD WAIKPILAAG VSINFRDANG WSALHWAAFS GREDTVAVLV  720
SLGADAGALA DPSPEHPLGK TAADLAYGNG HRGISGFLAE SSLTSYLEKL TVDAKENSSA  780
DSSGAKAVLT VAERTATPMS YGDVPETLSM KDSLTAVFNA TQAADRLHQV FRMQSFQRKQ  840
LSELGGDNKF DISDELAVSF AAAKTKKPGH SNGAVHAAAV QIQKKYRGWK KRKEFLLIRQ  900
RIVKIQAHVR GHQVRKQYRA IIWSVGLLEK IILRWRRKGS GLRGFKRDTI TKPTEPVCPA  960
PQEDDYDFLK EGRKQTEERL KKALTRVKSM AQYPEARAQY RRLLTVVEGF RENEASSSSA  1020
LKNNTEEAAN YNEEDDLIDI DSLLDDDTFM SLAFE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.17613s0007.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK229403	0.0	AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBank	BT010874	0.0	BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020883660.1	0.0	calmodulin-binding transcription activator 2 isoform X1
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	D7MR88	0.0	D7MR88_ARALL; Calmodulin-binding protein
STRING	scaffold_803130.1	0.0	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Araha.17613s0007.2.p

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]