PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.17793s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

YABBY

Protein Properties

Length: 153aa MW: 17245.6 Da PI: 8.8279

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.17793s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	162.6	2.9e-50	5	144	4	161
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 ++eq+Cy+ CnfCn ilavsvP +slf +vt+rCGhCt+l svn+a a q l+ + + +++++ + + s+ Araha.17793s0001.1.p 5 AMATEQLCYIPCNFCNIILAVSVPCSSLFDIVTIRCGHCTNLWSVNMAAALQSLSRPNF---------H----ATNNAVPE----YGSS 76 5689***************************************99988887776653.........2....22223322....2333 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 s+++++ s+ +++ ++++ v+rP ekrqrvPsayn+fikeeiqrika+nPdishreafs+aakn + Araha.17793s0001.1.p 77 SRDHTKIP-SRISTRTITEQRIVNRPSEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNVS 144 33333322.34455666666679******************************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.5E-59	7	144	IPR006780	YABBY protein
SuperFamily	SSF47095	1.03E-5	98	140	IPR009071	High mobility group box domain
CDD	cd00084	3.21E-4	107	134	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MANSAMATEQ LCYIPCNFCN IILAVSVPCS SLFDIVTIRC GHCTNLWSVN MAAALQSLSR 60 PNFHATNNAV PEYGSSSRDH TKIPSRISTR TITEQRIVNR PSEKRQRVPS AYNQFIKEEI 120 QRIKANNPDI SHREAFSTAA KNVSFYFFYM FE*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.17793s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119091	0.0	AK119091.1 Arabidopsis thaliana At2g26580 mRNA for unknown protein, complete cds, clone: RAFL21-44-F19.
GenBank	BT003734	0.0	BT003734.1 Arabidopsis thaliana At2g26580 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020885257.1	1e-99	axial regulator YABBY 5
Refseq	XP_020885258.1	1e-99	axial regulator YABBY 5
Swissprot	Q8GW46	2e-97	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D7LE80	2e-95	D7LE80_ARALL; Plant-specific transcription factor yabby family protein
STRING	fgenesh2_kg.4__584__AT2G26580.2	3e-96	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-99	YABBY family protein

Link Out ? help Back to Top
Phytozome	Araha.17793s0001.1.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]