PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.18004s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 138aa    MW: 15919.3 Da    PI: 10.5926
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.18004s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind55.31.8e-1712103298
                           HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT-.-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
          HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                           F  kly++++d++ + +isws e++nsf++++  ef +++Lpky +   nf+ F  +L   gF++v+ + +        +eF h+ F +
  Araha.18004s0001.1.p  12 FYIKLYQVVDDPSSDAIISWSeESNNSFIIWNVGEFCTTILPKYREFGiNFSRFFSKLRPHGFQRVRGRPGL-------MEFGHEDFVR 93 
                           999******************8788******************9886549******************9987.......********** PP

                           XXXXXXXXXX CS
          HSF_DNA-bind  89 gkkellekik 98 
                           ++ e l+++ 
  Araha.18004s0001.1.p  94 DSPERLKNMA 103
                           ******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-218102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.1E-258105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.6E-219100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-1612102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-61235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-66577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MGYNFPRGLS SFYIKLYQVV DDPSSDAIIS WSEESNNSFI IWNVGEFCTT ILPKYREFGI  60
NFSRFFSKLR PHGFQRVRGR PGLMEFGHED FVRDSPERLK NMAVESLSAK RRAKRAAKAK  120
AKKARVQVEC LLQHLRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123KAKAKKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.18004s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177880.27e-44Winged helix-turn-helix transcription repressor DNA-binding protein
TrEMBLR0GJE42e-44R0GJE4_9BRAS; Uncharacterized protein
STRINGBostr.20129s0193.1.p4e-57(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.12e-45Winged helix-turn-helix transcription repressor DNA-binding