PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.18108s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 118aa    MW: 13421.3 Da    PI: 7.3823
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.18108s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.87.8e-1322863198
                          .--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3 31 eesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                          + ++ +tl+++sg + +v++  + ++++   ++ GW +Fvk++ L+e+D +vFk++g sef   v vf+
  Araha.18108s0004.1.p 22 KLPQIVTLKSPSGATDSVRV--DEYDDKtLAFGCGWDKFVKDHLLEENDLLVFKFHGLSEF--EVLVFD 86
                          36678***************..999888799***********************9887999..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.842188IPR003340B3 DNA binding domain
SMARTSM010190.0032288IPR003340B3 DNA binding domain
SuperFamilySSF1019361.39E-141486IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-141486IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-92086IPR003340B3 DNA binding domain
CDDcd100174.68E-112286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MTVKNPRLYE PYLKFSTYCK RKLPQIVTLK SPSGATDSVR VDEYDDKTLA FGCGWDKFVK  60
DHLLEENDLL VFKFHGLSEF EVLVFDGQTL CEKPTSYFVR KCGHAEKTKG TDFNATP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.18108s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0356781e-118AL035678.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F17M5 (ESSA project).
GenBankAL1615831e-118AL161583.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79.
GenBankCP0026871e-118CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872332.12e-61B3 domain-containing protein REM16 isoform X1
RefseqXP_020872333.12e-61B3 domain-containing protein REM16 isoform X2
SwissprotQ8RYD13e-53REM16_ARATH; B3 domain-containing protein REM16
TrEMBLD7M8S61e-54D7M8S6_ARALL; Predicted protein
STRINGAl_scaffold_0007_7492e-55(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-55B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]