PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.18319s0011.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28992.9 Da    PI: 9.4327
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.18319s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.61.4e-221562249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          + +n+sn qvtfskRr g++KKA+EL++LC+ae+++i+fs+ gk++ +
  Araha.18319s0011.1.p 15 KMKNESNLQVTFSKRRFGLFKKASELCTLCGAEILMIVFSPGGKVFSF 62
                          679******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-34665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.133666IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-28793IPR002100Transcription factor, MADS-box
CDDcd002656.52E-38781No hitNo description
PRINTSPR004048.6E-20828IPR002100Transcription factor, MADS-box
PfamPF003196.3E-241562IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-202843IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-204364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVRSTKGRQK IEMKKMKNES NLQVTFSKRR FGLFKKASEL CTLCGAEILM IVFSPGGKVF  60
SFGHPSVHDL IHRFENPNYN SIIVHQQNNN LQLVETRPDR NIQYLNDILT EVLATQEKEK  120
NKRMVLDIMK ESREQRGNWY EKDVKDLDMN ETNHLISALQ DVKKKLVSVM SQQYSQVNVS  180
QNYFGQSSGF IGGPNVDVGI DLFDQRRNTF NYNPNMAVFP NHTPMFGYNN DGVIVPISNM  240
NYMSSYNFNQ S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-14796186Myocyte-specific enhancer factor 2A
3kov_B2e-14796186Myocyte-specific enhancer factor 2A
3kov_I2e-14796186Myocyte-specific enhancer factor 2A
3kov_J2e-14796186Myocyte-specific enhancer factor 2A
3p57_A2e-14796186Myocyte-specific enhancer factor 2A
3p57_B2e-14796186Myocyte-specific enhancer factor 2A
3p57_C2e-14796186Myocyte-specific enhancer factor 2A
3p57_D2e-14796186Myocyte-specific enhancer factor 2A
3p57_I2e-14796186Myocyte-specific enhancer factor 2A
3p57_J2e-14796186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.18319s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412340.0AY141234.1 Arabidopsis thaliana MADS-box protein AGL40 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875559.11e-166agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-68AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLD7MBG31e-155D7MBG3_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_70003371e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142941022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-133M-type_MADS family protein
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]