PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.18373s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 259aa    MW: 29138.1 Da    PI: 7.697
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.18373s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.24.9e-126083326
                          S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                          ++ C ++++t tCk+Gd+CkF H+
  Araha.18373s0001.1.p 60 EKDCTHYMQTRTCKFGDSCKFDHP 83
                          678********************8 PP
2zf-CCCH35.41.9e-11109135127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++ C+++ +t  CkyG+rCkF+H++
  Araha.18373s0001.1.p 109 PGEPDCPYYIKTQRCKYGSRCKFNHPR 135
                           5789*********************96 PP
3zf-CCCH38.22.3e-12154178327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++ C f+++tG Ck+G +CkF+H++
  Araha.18373s0001.1.p 154 EPMCTFYMKTGKCKFGLTCKFHHPK 178
                           689********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.4325785IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-65884IPR000571Zinc finger, CCCH-type
SMARTSM003560.00415984IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-96083IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-56382IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-5108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018108136IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8110135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-6113138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-6114137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3151179IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4151178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6154179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-6156177IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9157178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
VEPLPPGVKR TSEALYYPTL LGAHNTIGQT EAWYTTDYFT KRPKLESTSH LPIYPQRAGE  60
KDCTHYMQTR TCKFGDSCKF DHPIWVPEGG IPDWKEAPVV PNEEYPERPG EPDCPYYIKT  120
QRCKYGSRCK FNHPREEAAV SVETQDALPE RPSEPMCTFY MKTGKCKFGL TCKFHHPKDI  180
QVPSSSQDNG SSVGLTSEPD ATNNPHVTFT PALYHNSKGL PVRPVINPSS LCIRLTYYLI  240
GRIGELSTTP SVPIYKMF*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.18373s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291450.0AK229145.1 Arabidopsis thaliana mRNA for floral homeotic protein HUA1, partial cds, clone: RAFL16-42-O16.
GenBankAY0243570.0AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886407.11e-167zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-162C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLD7L0J21e-165D7L0J2_ARALL; Enhancer of ag-4 1
STRINGfgenesh2_kg.3__1328__AT3G12680.11e-166(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-165floral homeotic protein (HUA1)