PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.18528s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 250aa MW: 28804.2 Da PI: 10.1011

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.18528s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	89.5	3.9e-28	54	145	3	97
DUF573 3 fqrl.wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 +qrl wseeDei +LqG+ dfka t k+p+dd+++ yef+++ is++v+ ++veK+++LKkK ++v+ + keps s++h+qk+ e Araha.18528s0003.1.p 54 SQRLeWSEEDEIRVLQGMTDFKAITRKNPFDDMNGAYEFLQEYISVDVN--DFVEKMKSLKKKLMGQVRI--NAKEPSSSEPHYQKSSE 138 79999**************************************9995..8**************..99*********** PP DUF573 91 lskkiWg 97 l k iWg Araha.18528s0003.1.p 139 LLKLIWG 145 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.1E-19	59	145	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MGKVNTNRSK KMKEVCGGSG EAKPTGKKRK NEVTSMDKDV SAKRSKKDAK KASSQRLEWS 60 EEDEIRVLQG MTDFKAITRK NPFDDMNGAY EFLQEYISVD VNDFVEKMKS LKKKLMGQVR 120 INAKEPSSSE PHYQKSSELL KLIWGYHVEP AVEKPKRSKR IIKPKEEKQV MVHEGGKWFE 180 NGLIVRKIVS FGVDEDSLKR KWGSVPMEEK DMIDQKWRVL RTKELEYILQ KEKFLNDVFS 240 MMDEAASSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.18528s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002870618.1	1e-155	probable transcription factor At4g00232
Swissprot	Q3EAE7	1e-57	STKLL_ARATH; Probable transcription factor At4g00232
TrEMBL	D7MIR8	1e-154	D7MIR8_ARALL; Uncharacterized protein
STRING	scaffold_703767.1	1e-155	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16691	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00232.1	2e-44	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Araha.18528s0003.1.p