PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1861s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 106aa    MW: 11716.4 Da    PI: 8.1336
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1861s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.64.7e-295100196
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +Ca+Ck+l+++Ca++C+ apyfp+++  +f+ v k+FGa n+ k++++l  +e+r++a+++l y Aear rdP+++++g+il+ ++ l++
  Araha.1861s0003.1.p   5 RCAVCKILKETCAQGCISAPYFPSND-TSFEDVSKVFGAVNIRKIIADLnTPEQRQIAANCLRYAAEARRRDPISSCHGIILHHKSILNN 93 
                          6**********************998.79********************67788**********************************99 PP

               DUF260  90 lkaelal 96 
                           ++++++
  Araha.1861s0003.1.p  94 IEQDIEH 100
                          9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.1854105IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-27599IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MTSNRCAVCK ILKETCAQGC ISAPYFPSND TSFEDVSKVF GAVNIRKIIA DLNTPEQRQI  60
AANCLRYAAE ARRRDPISSC HGIILHHKSI LNNIEQDIEH STIRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-1969912105LOB family transfactor Ramosa2.1
5ly0_B4e-1969912105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1861s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893786.11e-66LOB domain-containing protein 32
SwissprotO496515e-45LBD32_ARATH; LOB domain-containing protein 32
TrEMBLD7KJB33e-65D7KJB3_ARALL; Uncharacterized protein
STRINGscaffold_103765.14e-66(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.12e-47LOB domain-containing protein 32