PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.1865s0005.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

SRS

Protein Properties

Length: 216aa MW: 24077.4 Da PI: 6.8435

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.1865s0005.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	186.6	9.3e-58	61	200	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 rs t+sCqdCGnqakk+C+h RCRtCCks+g++C thv+stW+p+akrrerqqq +++ s+++ ++ + re ++ ++l+s+ Araha.1865s0005.2.p 61 RSLTISCQDCGNQAKKGCTHGRCRTCCKSHGLHCPTHVRSTWIPIAKRRERQQQIQTPISNRNG--GGDRVGNYREI--NQPATLDSS-- 144 57789************************************************999777655..56666667765..444444443.. PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e++ +++P+evss+a+frcvr+s+ ddge ++aYqt+v i+Gh+fkGiLy+qG+e+ Araha.1865s0005.2.p 145 -------EMDETTFPDEVSSDALFRCVRMSGTDDGEGQYAYQTTVGIAGHLFKGILYNQGPEN 200 .......466677**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.1E-57	64	199	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-26	66	108	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.4E-29	151	198	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MAGIGSSRNN EEDNQQNTNW VWYRNASNNP STSHNNQIWQ QPSLDLYPGQ IDVCDLTTSS 60 RSLTISCQDC GNQAKKGCTH GRCRTCCKSH GLHCPTHVRS TWIPIAKRRE RQQQIQTPIS 120 NRNGGGDRVG NYREINQPAT LDSSEMDETT FPDEVSSDAL FRCVRMSGTD DGEGQYAYQT 180 TVGIAGHLFK GILYNQGPEN MSMPTTHFYE NPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.1865s0005.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007212	1e-163	AC007212.7 Arabidopsis thaliana chromosome 2 clone F8D23 map PhyB, complete sequence.
GenBank	CP002685	1e-163	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001323479.1	1e-142	SHI-related sequence 4
Swissprot	Q9SI19	1e-141	SRS4_ARATH; Protein SHI RELATED SEQUENCE 4
TrEMBL	A0A178VX85	1e-142	A0A178VX85_ARATH; SRS4
STRING	AT2G18120.1	1e-140	(Arabidopsis thaliana)
STRING	fgenesh1_pm.C_scaffold_3002780	1e-140	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18120.1	1e-144	SHI-related sequence 4

Link Out ? help Back to Top
Phytozome	Araha.1865s0005.2.p