PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.18685s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 149aa MW: 16171 Da PI: 9.7384

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.18685s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.4e-38	26	86	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg +rk+ k+s Araha.18685s0003.1.p 26 QQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRS 86 57899***************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-35	2	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	28	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MPSEFSESRR IPKLSHGGDV AIPTDQQEQL PCPRCESTNT KFCYYNNYNF SQPRHFCKSC 60 RRYWTHGGTL RDIPVGGVSR KSSKRSRTCS SAATTTVVGS RNFPLQATPV LFPQSSSNGV 120 STTSKGNASS LYGGQESKVG FVSGDYLA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00593	DAP	Transfer from AT5G66940	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.18685s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026640	1e-163	AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBank	AB493817	1e-163	AB493817.1 Arabidopsis thaliana At5g66940 gene for hypothetical protein, partial cds, clone: RAAt5g66940.
GenBank	BT029523	1e-163	BT029523.1 Arabidopsis thaliana At5g66940 mRNA, complete cds.
GenBank	CP002688	1e-163	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865040.2	3e-92	dof zinc finger protein DOF5.8
Swissprot	Q9FGD6	1e-85	DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBL	D7MLD9	8e-91	D7MLD9_ARALL; Dof-type zinc finger domain-containing protein
STRING	scaffold_803422.1	1e-91	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	2e-67	Dof family protein

Link Out ? help Back to Top
Phytozome	Araha.18685s0003.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]