PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.18846s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 258aa    MW: 29149.4 Da    PI: 5.6623
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.18846s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-18246147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          rg++T+eE++ +++++ +lG++ W++Ia +++ gRt++++k++w+++
  Araha.18846s0006.1.p  2 RGNFTAEEEQTIINLHSLLGNK-WSSIAGHLP-GRTDNEIKNYWNTH 46
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.2E-16149IPR001005SANT/Myb domain
PROSITE profilePS5129427.546151IPR017930Myb domain
SuperFamilySSF466895.38E-15255IPR009057Homeodomain-like
PfamPF002491.4E-16246IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-24348IPR009057Homeodomain-like
CDDcd001671.00E-12447No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
KRGNFTAEEE QTIINLHSLL GNKWSSIAGH LPGRTDNEIK NYWNTHIRKK LIQMGIDPVT  60
HRPRTDHLNV LAALPQLLAA SNFNNLLNLN QNIQLDATSV AKAQLLHSMI QVLSSNNTSS  120
SFDIHHTNNN LFGQSSFLEN LPNISENPYD QTQSLSHIDN QPLDPFSSPI RVVAHQLDQN  180
LIPPLISASP DESKETQMMV KNKEIMKHND HTSNPSSTST FTQDHQPWCD IIDDEASDSY  240
WKEIIEQTCS EPWPFRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.18846s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493100.0AF249310.2 Arabidopsis thaliana putative transcription factor (MYB107) mRNA, complete cds.
GenBankAY5195830.0AY519583.1 Arabidopsis thaliana MYB transcription factor (At3g02940) mRNA, complete cds.
GenBankBT0256600.0BT025660.1 Arabidopsis thaliana At3g02940 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888489.10.0transcription factor MYB39
TrEMBLD7L0B10.0D7L0B1_ARALL; MYB107
STRINGfgenesh2_kg.3__241__AT3G02940.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.11e-157myb domain protein 107