PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.18894s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BBR-BPC
Protein Properties Length: 230aa    MW: 25243.1 Da    PI: 10.7371
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.18894s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind266.81.1e-813122997301
             GAGA_bind  97 vgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
                           +++ ++++t+ id +q    +q ++    +  ++ l  +p ++++++++++k+k+ +q++ k++++k+ +kk+  ++s+k++k+ s  +
  Araha.18894s0002.1.p  31 HSCVAVPNTTDIDLSQV---SQATPAEGVMVPQSRLFPPPSRDSRNDMETVKQKSVNQSPLKALKPKTPRKKR--SASNKSKKTLSI-P 113
                           45788889999998877...566665555999999**********************9999999988888777..667667776665.7 PP

             GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                           ++k+ekk++d++++  s+D s++P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+  R+agrKmS+ga+ klL++La+
  Araha.18894s0002.1.p 114 ETKREKKNLDINIDISSFDSSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPRVRLAGRKMSNGAYVKLLARLAG 202
                           99*************************************************************************************** PP

             GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                           eGy+ls+pvDLk+hWA+HGtnkfvti+
  Araha.18894s0002.1.p 203 EGYNLSHPVDLKNHWARHGTNKFVTIK 229
                           **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.8E-1021229IPR010409GAGA-binding transcriptional activator
PfamPF062171.2E-6872229IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNSFPSLKLM LSATNANKDA SLRTSNAYWF HSCVAVPNTT DIDLSQVSQA TPAEGVMVPQ  60
SRLFPPPSRD SRNDMETVKQ KSVNQSPLKA LKPKTPRKKR SASNKSKKTL SIPETKREKK  120
NLDINIDISS FDSSGVPPPV CSCTGVSRVC YKWGMGGWQS SCCTISISTY PLPMSTTRPR  180
VRLAGRKMSN GAYVKLLARL AGEGYNLSHP VDLKNHWARH GTNKFVTIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.18894s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0899610.0EU089961.1 Arabidopsis arenosa GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885696.11e-153protein BASIC PENTACYSTEINE7
SwissprotO822861e-145BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLD7LHX41e-152D7LHX4_ARALL; GAGA-binding transcriptional activator
STRINGfgenesh2_kg.4__1574__AT2G35550.41e-153(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-128basic pentacysteine 7