PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19114s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 293aa    MW: 33106.9 Da    PI: 9.2167
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19114s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-173988155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Araha.19114s0001.1.p 39 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 88
                          78*******************......55************************997 PP
2AP244.34.3e-14131181155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV+ +k  grW++++  +     + k+++lg f+t+ eAa+a+++a+ k +g
  Araha.19114s0001.1.p 131 SKYRGVTLHK-CGRWESRLGQF----LNkKYVYLGLFDTEIEAARAYDKAAIKCNG 181
                           89********.7****995553....234**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-163997IPR016177DNA-binding domain
PfamPF008472.7E-93988IPR001471AP2/ERF domain
PROSITE profilePS5103217.8994096IPR001471AP2/ERF domain
CDDcd000181.90E-114097No hitNo description
Gene3DG3DSA:3.30.730.102.3E-174096IPR001471AP2/ERF domain
SMARTSM003802.7E-3140102IPR001471AP2/ERF domain
CDDcd000182.97E-24131189No hitNo description
PfamPF008473.0E-9131181IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-17131190IPR016177DNA-binding domain
PROSITE profilePS5103215.488132189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-17132189IPR001471AP2/ERF domain
SMARTSM003805.7E-31132195IPR001471AP2/ERF domain
PRINTSPR003673.7E-6133144IPR001471AP2/ERF domain
PRINTSPR003673.7E-6171191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MWNLNDSPDH HEESGSRGNP PEISPPIKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  60
GKQVYLGGFD TAHAAARAYD RAAIKFRGVD ADINFDIEDY VDDLKQMGNL TKEEFMHVLR  120
RQSTGFPRGS SKYRGVTLHK CGRWESRLGQ FLNKKYVYLG LFDTEIEAAR AYDKAAIKCN  180
GKDAVTNFDP KVYEEELSPE TTRNGHNLDL SLGESNSEEF GLKSDIASIR SRIRDDERLL  240
GRDLSLAMMT TTVRSEKQTD GGGNRVGMAA SSGFSPQPSP YRIPHTFHFS RP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19114s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1761450.0AK176145.1 Arabidopsis thaliana mRNA for floral homeotic protein apetala2-like, complete cds, clone: RAFL22-96-G17.
GenBankAY0882380.0AY088238.1 Arabidopsis thaliana clone 4623 mRNA, complete sequence.
GenBankBT0292060.0BT029206.1 Arabidopsis thaliana At5g67180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865021.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotQ9FH951e-172TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLD7MKS60.0D7MKS6_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80026280.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-167target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]