PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19152s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 397aa    MW: 44414.9 Da    PI: 6.7218
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19152s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.71.1e-111561550
                          SHHHHHHHHHH.HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  5 nksnrqvtfsk.RrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          ++ +r+ +f k R  g  KKA+ELSvLC+  v  i +++++ l+ ++
  Araha.19152s0003.1.p 15 DDLQRKKSFFKqRFPGFKKKAKELSVLCGNSVGFICYGPDNDLHVWP 61
                          5667777777626689999***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.3671564IPR002100Transcription factor, MADS-box
CDDcd002662.04E-171592No hitNo description
SuperFamilySSF554554.19E-131896IPR002100Transcription factor, MADS-box
PfamPF003191.6E-91960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAPRDKKPNK SDDDDDLQRK KSFFKQRFPG FKKKAKELSV LCGNSVGFIC YGPDNDLHVW  60
PQPQDHNPQT LTQIVAKFNA LSDQKRKHHA CDLYDFPNLK GLSGDDLRNH LVNLDSHLVG  120
VKQQKISIMK RKLKKPKSKG TEEDDHLRVS DNNATISNRK VSSSKDQRLG FGGVFDELGN  180
VLRGSHETVS NIRSSTASKV SRDVGSVTDS SLLDPFTLGF SGDYFPADLM AVTDNLGVCA  240
NNSVWDLSWL DFDFSPTLFT DDWTVSGYNP LQGATDSFTA STYQTPISNQ LKESLRDVKE  300
KLTKILIDVN EFIKSNFQNF IRWTSSLGVI CEANSTVIDD GSIITVIDTL PVSNQLKESL  360
RDVKEQLTKL EATREEAETK MNETQTLSAD EIRKLR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19152s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-101CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT2K101e-101AC005966.2 Arabidopsis thaliana chromosome 1 BAC T2K10 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888172.10.0agamous-like MADS-box protein AGL49
SwissprotQ9ZUI94e-82AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLD7KXG10.0D7KXG1_ARALL; Uncharacterized protein
STRINGscaffold_200645.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59810.17e-81AGAMOUS-like 50
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]