PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19350s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 98aa    MW: 11257.7 Da    PI: 9.8638
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19350s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.2e-071154344
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          +WT    + + +a + + ++   +W+ +a+ +g g+t +++k ++
  Araha.19350s0002.1.p 11 SWTFNQNKMFERALAVYDKDtpdRWHNVAKAVG-GKTVEEVKRHY 54
                          799999*************9*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.098458IPR017877Myb-like domain
SMARTSM007171.0E-5860IPR001005SANT/Myb domain
SuperFamilySSF466891.88E-121065IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-41159IPR009057Homeodomain-like
CDDcd001672.33E-51254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASNSRSSTS SWTFNQNKMF ERALAVYDKD TPDRWHNVAK AVGGKTVEEV KRHYDILVED  60
LFNIETGRVP LPNYKTFESN SRGINDFDTR KMKNLKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-33197192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19350s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3953461e-130DQ395346.1 Arabidopsis thaliana RAD-like protein 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001077825.11e-63RAD-like 6
SwissprotQ1A1731e-64RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A178W9263e-62A0A178W926_ARATH; RSM3
STRINGAT1G75250.15e-58(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-61RAD-like 6