PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.19755s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 175aa MW: 19257.1 Da PI: 9.453

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.19755s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	8.2e-07	2	29	23	55
HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 L+el+P + K +K+++L A+eY+ksLq Araha.19755s0001.1.p 2 LQELIPRC-----NKSTKVSTLDGAIEYMKSLQ 29 999*98.....699**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.44E-6	1	33	No hit	No description
SuperFamily	SSF47459	3.01E-9	1	47	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-8	1	43	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.448	1	28	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
TLQELIPRCN KSTKVSTLDG AIEYMKSLQS QIQMISMGQG MMPSMMNEGN MQEFMPHMAM 60 KMMGMNRPPF IPSPGTPFPS PAQIAGVGPS PAYPAPRYPF PNIQTFEPSR VRLPSPVVNQ 120 PQFTAYMNPY SQFVGHHLMQ QPRPPLQSQT TSQLNSGQAS SSKEPEDKDS QPKG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.19755s0001.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001320084.1	2e-74	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9SVU7	5e-70	BH056_ARATH; Putative transcription factor bHLH056
TrEMBL	D7MD82	8e-96	D7MD82_ARALL; Uncharacterized protein
STRING	scaffold_701376.1	1e-96	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9041	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	4e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.19755s0001.1.p