PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19807s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 119aa    MW: 13853.8 Da    PI: 9.0685
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19807s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like25.82.4e-081203655
               G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                          m+v +Lt+++vkSHLQ+YR 
  Araha.19807s0001.1.p  1 MGVRDLTMSQVKSHLQMYRN 20
                          99*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-7121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MGVRDLTMSQ VKSHLQMYRN KKEANSIQER RMIRQMKLRQ SQQYLQIYER ARNVTQDFQN  60
HQRVQLDITE KVTPILEPSN KPMEVGLNEN RDNDVVVVGD GAICEEGLSF ELTLGRKY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19807s0001.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879380.12e-68transcription repressor KAN1
TrEMBLD7M1R72e-56D7M1R7_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_60029743e-57(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.15e-36G2-like family protein