PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19885s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 365aa    MW: 40682.1 Da    PI: 9.0505
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19885s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_119.91.6e-062422811756
                           HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                           A+rsR RK ++i+eLe+ v+ L+ e ++   ele l+++ 
  Araha.19885s0001.1.p 242 AQRSRVRKIQYIAELERNVQMLQVEGSEVSAELEFLNQQN 281
                           89******************************99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0035231290IPR004827Basic-leucine zipper domain
CDDcd147032.76E-16232281No hitNo description
SuperFamilySSF579591.01E-5242284No hitNo description
Gene3DG3DSA:1.20.5.1705.6E-5242284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MASSKGSQNL RNLGCTGKQA LLPPKSPFTG GPTFCSDFPP SSVIGSKAVQ KLGEGNVNHH  60
RTSSESFLIE EQPSWLDDLL NEPETPVRKG GHRRSSSDSF AYVDVPVGFD VDYTLWDGGR  120
YNNNSSFSAH ARGPKESDYL RSQPVPFYPS AHLPKQKMRT WDSLSDSGAR PNSSSGCLES  180
SPITRSGSSG SLHDAEKAYC AADGKKDFIN NFSKSSSEKR DNSLAKSATS EADTKRARQQ  240
FAQRSRVRKI QYIAELERNV QMLQVEGSEV SAELEFLNQQ NLILSLENKS LKNRLESLAQ  300
EQLIKYLEHD VLEKEIVRLR ALYQLQQQHE PQQQQQTKKQ GSSSHQRSKS RDLESQFTNL  360
SLRP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19885s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0024670.0BT002467.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872349.20.0uncharacterized protein At4g06598
SwissprotQ8W3M71e-164Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLA0A178URP80.0A0A178URP8_ARATH; Uncharacterized protein
STRINGBostr.3877s0064.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33602444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06598.10.0
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]