PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20365s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 284aa    MW: 32061 Da    PI: 4.7705
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20365s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.5e-21143193255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  Araha.20365s0001.1.p 143 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAARAYDEAAFRLRG 193
                           8********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.45E-33142201No hitNo description
Gene3DG3DSA:3.30.730.102.3E-33142202IPR001471AP2/ERF domain
PfamPF008473.9E-15143193IPR001471AP2/ERF domain
SMARTSM003801.8E-37143207IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23143203IPR016177DNA-binding domain
PROSITE profilePS5103224.434143201IPR001471AP2/ERF domain
PRINTSPR003679.8E-11144155IPR001471AP2/ERF domain
PRINTSPR003679.8E-11167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MATPNEVSAL WFIEKHLLDE TSPVATDPWM KHEPSATESS SDSSSMLFQS SSSSLCKPEI  60
IDLDTPRFMD FISTPFDFDS EISVSDFDFK ISNQNQVEPE IQSQIRKPPL KISLPAKTEW  120
IQFAAENTKP EVTKPVSEEE KKHYRGVRQR PWGKFAAEIR DPNKRGSRVW LGTFDTAIEA  180
ARAYDEAAFR LRGSKAILNF PLEVGKWKPR ADESEKKRKR DDDDDAEKVT VVEKVLKTEQ  240
SVDVNGGETF PLCDWDLTGF LNFPLLSPLS PHPSFGYSQL TVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-31142204163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-31142204466ATERF1
3gcc_A3e-31142204466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.20365s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0081070.0AB008107.1 Arabidopsis thaliana AtERF-5 mRNA for ethylene responsive element binding factor 5, complete cds.
GenBankAB0181170.0AB018117.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5.
GenBankAF3857090.0AF385709.1 Arabidopsis thaliana AT5g47230/MQL5_9 mRNA, complete cds.
GenBankAK1175680.0AK117568.1 Arabidopsis thaliana At5g47230 mRNA for putative ethylene responsive element binding factor 5 (ATERF5), complete cds, clone: RAFL17-21-N19.
GenBankAY0780140.0AY078014.1 Arabidopsis thaliana AT5g47230/MQL5_9 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_568679.11e-171ethylene responsive element binding factor 5
SwissprotO803411e-172EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A178UKK91e-170A0A178UKK9_ARATH; ERF5
STRINGAT5G47230.11e-171(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-122ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]