PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2050s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YA

Protein Properties

Length: 195aa MW: 21768.1 Da PI: 9.2539

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2050s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	106.2	2.7e-33	103	159	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Ra+le+++k+ +ksrkpylheSRh hA+rRpRg+gGrF Araha.2050s0003.1.p 103 EEPVFVNAKQYHGILRRRQSRARLESQNKV-IKSRKPYLHESRHLHAIRRPRGCGGRF 159 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.8E-37	101	162	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.39	102	162	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.4E-27	104	159	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.3E-24	105	127	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.3E-24	136	159	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MTSSIHELSD NIGSHEKQEQ RDSHFQPPIP SGRNYESIAT SLVYSEPVPH RGSTNSMAPG 60 QYPYPDPYYR SIFAPPPQPY TGVHLQLMGM QQQGVPLPSD AVEEPVFVNA KQYHGILRRR 120 QSRARLESQN KVIKSRKPYL HESRHLHAIR RPRGCGGRFL NAKKDGEHHE DSTHEETSNL 180 SSDKSAMAAS SGTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-22	102	171	1	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2050s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT004274	0.0	BT004274.1 Arabidopsis thaliana clone RAFL15-46-O22 (R50095) putative transcription factor (At1g30500) mRNA, complete cds.
GenBank	BT005561	0.0	BT005561.1 Arabidopsis thaliana clone U50095 putative transcription factor (At1g30500) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020867054.1	1e-135	nuclear transcription factor Y subunit A-7
Refseq	XP_020867055.1	1e-135	nuclear transcription factor Y subunit A-7
Refseq	XP_020867056.1	1e-135	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	1e-130	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	D7KFK5	1e-127	D7KFK5_ARALL; CCAAT-binding transcription factor (CBF-B/NF-YA) family protein
STRING	AT1G30500.2	1e-128	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4168	27	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-123	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Araha.2050s0003.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]