PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20560s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 311aa    MW: 34160 Da    PI: 7.192
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20560s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-173383256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                           ++GVr++  +g+WvAeIr+p     +  +r +lg+f t  eAa a+++a+ kl+g+
  Araha.20560s0006.1.p 33 TFRGVRQRT-WGKWVAEIREP-----HrgTRLWLGTFNTSVEAAMAYDEAATKLYGH 83
                          69****999.**********6.....337*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.43E-273288No hitNo description
PROSITE profilePS5103220.3763390IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-203389IPR016177DNA-binding domain
SMARTSM003801.4E-323396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-283389IPR001471AP2/ERF domain
PRINTSPR003672.6E-93445IPR001471AP2/ERF domain
PfamPF008478.5E-133483IPR001471AP2/ERF domain
PRINTSPR003672.6E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEEEQPPAKK RNMGRSRKGC MKGKGGPENA TCTFRGVRQR TWGKWVAEIR EPHRGTRLWL  60
GTFNTSVEAA MAYDEAATKL YGHEAKLNLV HPQSLQQQQQ QVVVNRNLSF SGHGSGSWAS  120
KLDTVPVLDL GLGPATGSGG SWSGRSNFLQ EDDDHKYNRR PSSSGSNLCW LLPKQSDLQD  180
QDTVNAASGC GVEGGGGSTL TFSTKLKPKN LVVSPKNGLY SGAWSRFLVG QEKKTEHDVP  240
SSCGSSDNKE SISVPSGGGE RMHRPEVEER TGYLEMDDLL EIDDLGLLIG KNGDFKNWCC  300
EEFQHPWNWF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-153489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.20560s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0516260.0AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence.
GenBankAY5608530.0AY560853.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18450) mRNA, complete cds.
GenBankBT0260740.0BT026074.1 Arabidopsis thaliana At5g18450 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873895.20.0dehydration-responsive element-binding protein 2G
SwissprotP618270.0DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLD7LXV30.0D7LXV3_ARALL; Uncharacterized protein
STRINGscaffold_601912.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-167ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]