PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2056s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 260aa    MW: 30094.4 Da    PI: 6.4493
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2056s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.27.8e-24110170259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg+ WrKYGqK++k+se+ rsYY+C+++   +C++kk+v++ +++p +  +tY g+H+++
  Araha.2056s0010.1.p 110 HDGFLWRKYGQKQIKESEYQRSYYKCAYTkdqNCEAKKQVQKIQHNPPLYSTTYFGQHTCQ 170
                          6**************************988899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-24101170IPR003657WRKY domain
PROSITE profilePS5081120.518104172IPR003657WRKY domain
SuperFamilySSF1182903.14E-23105171IPR003657WRKY domain
SMARTSM007747.0E-35109171IPR003657WRKY domain
PfamPF031063.5E-23111170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MNCCQQKVME KLLRGRRCAN QLLIMDHTES DSSMEREDLA KSVLHCFSDS LSILIDTNDH  60
QDDQSNNSSP QDSSPVLESA RKPLHKRGRK TSMAESSDYH RRESSTPIYH DGFLWRKYGQ  120
KQIKESEYQR SYYKCAYTKD QNCEAKKQVQ KIQHNPPLYS TTYFGQHTCQ LHQAYATFPI  180
DTSDTEEHDG SHMIRFGHPA TSFFASTPSL RQHQNQDHIK DDYMKPVIAE EWVPSEWMSS  240
EVAHAVEAFE FNPLYMDIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-141111701069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2056s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937300.0AB493730.1 Arabidopsis thaliana At5g01900 mRNA for hypothetical protein, partial cds, clone: RAAt5g01900.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870894.10.0probable WRKY transcription factor 62
SwissprotQ9LZV61e-172WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBLD7M6E10.0D7M6E1_ARALL; Predicted protein
STRINGAl_scaffold_0006_130.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145051522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-157WRKY DNA-binding protein 62