PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21147s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 541aa    MW: 59930.6 Da    PI: 7.3221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21147s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.59.9e-18284333255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Araha.21147s0001.1.p 284 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 333
                           889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-23281353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.225282332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-19283352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-15284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.56E-15284335No hitNo description
SMARTSM003533.4E-13288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MELPQPRPFK TEGRKPTHDF LSLCSHSTVH PDPKPTPPSS QGSHLKTHDF LQPLECVAAK  60
EEVSRINTTT TASEKPPPPA PPPPLQHVLP GGIGTYTISP IPYFHHHHQR IPKPELSPPM  120
MFNAAAQASG GNERNIVDEN SNSNCSSYAA AASGFTLWDE SASGKKGQTR KENNVVERVN  180
MRADVAATVG QWPVVERRSQ SLTNNHMSGF SSRSSSQGSG LKSQSFMDMI RSAKGSSQDD  240
DLDDEEDFIM KKESSSTSQS HRVDLRVKAD VRGSANDQKL NTPRSKHSAT EQRRRSKIND  300
RFQMLRQLIP NSDQKRDKAS FLLEVIEYIQ FLQEKADKYE TSYQGWNHEP AKLLNWQSNN  360
QQLVPEGVAF APKMEEEKNN IPVSVLATAQ GVVIDHPTTA TTSPFPLSIQ SNSFFSPVIA  420
GNPVPQFHTR VTSSETVEPS PSSRNQTQPL KEEEEVEDEE VVEGNIRISS VYSQGLVKTL  480
REALENSGVD LTKASISVEI ELAKQSSSSF KGHEVREPVS RTRNDDVKQT RKPKRLKTGQ  540
*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.21147s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533130.0AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873342.10.0transcription factor BIM1 isoform X1
SwissprotQ9LEZ30.0BIM1_ARATH; Transcription factor BIM1
TrEMBLD7M1880.0D7M188_ARALL; Uncharacterized protein
STRINGscaffold_600819.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.40.0bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]