PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.21147s0009.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YB

Protein Properties

Length: 162aa MW: 18063.3 Da PI: 4.2964

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.21147s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	78.6	8.4e-25	11	102	3	92
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.y.lkk 89 ++d+ lP a +++i+k++lPa+ ++++da++++ ec +efi +++se+++ c++e+++ti+++ +l al lGf +yve++ + y +k Araha.21147s0009.1.p 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAaYeQHK 99 6899***************************************************************************9865142345 PP NF-YB 90 yre 92 y Araha.21147s0009.1.p 100 YET 102 544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.9E-40	8	139	IPR009072	Histone-fold
SuperFamily	SSF47113	6.07E-36	12	142	IPR009072	Histone-fold
Pfam	PF00808	7.2E-22	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLISSESNE 60 VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHKY ETMQDSQRSV KMNSGAEMTE 120 EEAAAEQQRM FAEARARMNG GVSVPQPEQL EETQQTTSLQ S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	3e-35	12	135	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.21147s0009.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF428400	0.0	AF428400.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds.
GenBank	AK227164	0.0	AK227164.1 Arabidopsis thaliana mRNA for DR1-like protein, complete cds, clone: RAFL09-87-H07.
GenBank	AY087017	0.0	AY087017.1 Arabidopsis thaliana clone 30536 mRNA, complete sequence.
GenBank	AY125544	0.0	AY125544.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023635732.1	1e-105	protein Dr1 homolog isoform X1
Refseq	XP_023635733.1	1e-105	protein Dr1 homolog isoform X1
Swissprot	P49592	1e-104	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	D7M195	1e-109	D7M195_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.6__788__AT5G08190.1	1e-110	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3828	26	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08190.1	1e-74	nuclear factor Y, subunit B12

Link Out ? help Back to Top
Phytozome	Araha.21147s0009.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]