PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2125s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 180aa    MW: 20118 Da    PI: 4.7574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2125s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37.1e-1781131255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  Araha.2125s0002.1.p  81 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDVDAARAYDCAAFKLRG 131
                          7********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-3180140IPR001471AP2/ERF domain
PfamPF008472.1E-1181131IPR001471AP2/ERF domain
SMARTSM003808.3E-3681145IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2281140IPR016177DNA-binding domain
PROSITE profilePS5103224.48781139IPR001471AP2/ERF domain
CDDcd000182.24E-2881139No hitNo description
PRINTSPR003673.1E-138293IPR001471AP2/ERF domain
PRINTSPR003673.1E-13121141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGDFDFDASF VSGLWCIEPQ VPKQEPDSPV LDPDSFVNEF LQVEGESSSS SPELNSSSST  60
YETDQSLKKA ERFEEEEEAR HYRGVRRRPW GKFAAEIRDP AKKGSRIWLG TFESDVDAAR  120
AYDCAAFKLR GRKAVLNFPL DAGKYEAPAN SGRKRKRSDV QEELQRTQSN SSSSSCDAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2978140264ATERF1
3gcc_A6e-2978140264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2125s0002.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507120.0AY350712.1 Arabidopsis arenosa clone BAC Aer6D24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871278.11e-126ethylene-responsive transcription factor ERF106
SwissprotQ9LY051e-109EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLD7M0K51e-124D7M0K5_ARALL; AP2 transcription factor
STRINGscaffold_600764.11e-125(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-100ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]