PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.21298s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 197aa MW: 21978.6 Da PI: 5.7642

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.21298s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.6e-11	143	183	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L++l+P+ +K++ +++Le Av+Y+k Lq Araha.21298s0001.1.p 143 RKRRERINDRLKTLQSLVPNG-----TKVDISTMLEDAVHYVKFLQ 183 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.831	133	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-13	138	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-12	139	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-12	139	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.32E-12	142	187	No hit	No description
Pfam	PF00010	5.8E-9	143	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MENEAFVDGE LESLLGMFNF DQCSSNESSF CNAHNEFDVV SSSDDFFPFG KILQGNYAAV 60 LDGSNHQTNM YDDSRQELVK PRKKQKISSE SNLVTEPNTA WSDGQSLNDE KALGLVANTS 120 KSLKRKAKSN KGIASDPQSL YARKRRERIN DRLKTLQSLV PNGTKVDIST MLEDAVHYVK 180 FLQLQIKVTT FVLLES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	LKRKAKS
2	123	145	KRKAKSNKGIASDPQSLYARKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.21298s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023030	1e-78	AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5.
GenBank	CP002688	1e-78	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002862272.2	1e-127	transcription factor bHLH139
Refseq	XP_020888245.1	1e-127	transcription factor bHLH139
Swissprot	Q3E7L7	1e-118	BH139_ARATH; Transcription factor bHLH139
TrEMBL	D7MPZ8	1e-126	D7MPZ8_ARALL; Basic helix-loop-helix family protein
STRING	Al_scaffold_0797_1	1e-127	(Arabidopsis lyrata)
STRING	fgenesh2_kg.8__503__AT5G43175.1	1e-127	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4132	22	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43175.1	1e-121	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.21298s0001.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]