PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2135s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB_related

Protein Properties

Length: 174aa MW: 19536 Da PI: 10.1744

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2135s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.6e-15	27	71	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Araha.2135s0003.1.p 27 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 71 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.772	20	76	IPR017930	Myb domain
SuperFamily	SSF46689	2.66E-17	22	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-18	23	75	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.8E-13	24	71	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-13	24	74	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-13	27	71	IPR001005	SANT/Myb domain
CDD	cd00167	6.85E-12	27	72	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MKYHLIVCNK RSPAGRSPEL ERKKGVPWTE EEHKLFLMGL KKYGKGDWRN ISRNFVITRT 60 PTQVASHAQK YFIRQLSGGK DKRRASIHDI TTVNLEDEAS LETNKSSIVV GEQRSRLTAF 120 PWNPTDNNGT HANAFNIRIG NAINGVHSYG QVLLGGFNNA DSCYDAQNTM FQL*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00568	DAP	Transfer from AT5G58900	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2135s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118891	0.0	AK118891.1 Arabidopsis thaliana At5g58900 mRNA for putative I-box binding factor, complete cds, clone: RAFL21-22-M07.
GenBank	AY519533	0.0	AY519533.1 Arabidopsis thaliana MYB transcription factor (At5g58900) mRNA, complete cds.
GenBank	BT005473	0.0	BT005473.1 Arabidopsis thaliana clone U51211 putative I-box binding factor (At5g58900) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020869590.1	1e-119	transcription factor DIVARICATA
Swissprot	Q8S9H7	4e-55	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	D7MR44	1e-117	D7MR44_ARALL; Myb family transcription factor
STRING	fgenesh2_kg.8__1829__AT5G58900.1	1e-118	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1228	27	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	1e-117	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Araha.2135s0003.1.p

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]