PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2135s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 435aa    MW: 49003.5 Da    PI: 8.5522
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2135s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.3e-1893139148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd +l+++v+q+G + W++I++++  gR +kqc++rw+++l
  Araha.2135s0007.1.p  93 KGQWTAEEDRKLIRLVRQHGERKWALISEKLE-GRAGKQCRERWHNHL 139
                          799*****************************.*************97 PP
2Myb_DNA-binding46.21e-14166207245
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + W++eE+  lv+ + + G++ W+ Ia+ ++ gRt++++k++w+
  Araha.2135s0007.1.p 166 DGWSEEEERVLVESHMRIGNK-WAEIAKLIP-GRTENSIKNHWN 207
                          56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.44588143IPR017930Myb domain
SuperFamilySSF466894.67E-2890206IPR009057Homeodomain-like
SMARTSM007171.3E-1692141IPR001005SANT/Myb domain
PfamPF002491.0E-1693139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2394148IPR009057Homeodomain-like
CDDcd001679.55E-1696139No hitNo description
PROSITE profilePS5129417.748160214IPR017930Myb domain
SMARTSM007175.8E-13164212IPR001005SANT/Myb domain
PfamPF002493.1E-13167207IPR001005SANT/Myb domain
CDDcd001672.18E-10168210No hitNo description
Gene3DG3DSA:1.10.10.601.6E-16168208IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MRYVFGTFLY GQKNDVLCSK KQECSRDRPI VKTKMSIETR SDNKENTTFG PTREKHVVLN  60
GGNRSPIGEV VVRSAARDYQ NSTKKRPYKN LIKGQWTAEE DRKLIRLVRQ HGERKWALIS  120
EKLEGRAGKQ CRERWHNHLR PDIKGSDICP SISTFLPKQT KNNQKDGWSE EEERVLVESH  180
MRIGNKWAEI AKLIPGRTEN SIKNHWNATK RRQNSKRKHK RESNADNNDT DVSPSAKRPC  240
ILQDYIKSIG SNDINKNNDE NTISVLSTPN LDQIYSDGDS ASSMLGDPYD EELVYLQNIF  300
ANHPISLENI GLSQTSDEIT QSSASGFMTK KPNPNLHNNV GTHHQEAAIT APVNTPHLAS  360
DIYLSYLLNG TTSSYSDTHF PSSSSSTSST TVEHGGHNEF LEPQANSTSE RREMDLIEML  420
SGSIQGSNIC FPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-40912132104C-Myb DNA-Binding Domain
1msf_C8e-40912132104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209220KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2135s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168850.0AB016885.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19M22.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887723.10.0myb-like protein Q
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLD7L5780.0D7L578_ARALL; MYB119
STRINGfgenesh2_kg.3__2684__AT5G58850.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]