PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2148s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 199aa    MW: 22924.5 Da    PI: 8.6866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2148s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66.1e-152778255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         +++h e Er+RR+++ s ++ Lr+llP  +   ++K s ++ + +Av+YIk+Lq
  Araha.2148s0004.1.p 27 KMMHRETERQRRQEMASLYASLRSLLPLHF--IKGKRSTSDQVNEAVNYIKYLQ 78
                         789*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-142391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.3542577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-122778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-102782No hitNo description
Gene3DG3DSA:4.10.280.102.9E-112791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-73183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDDCRDKRRR RCTTLTCGTD NNNDMEKMMH RETERQRRQE MASLYASLRS LLPLHFIKGK  60
RSTSDQVNEA VNYIKYLQRK IKELSVRRDD LMVLSRGSFL GSSNDDSKEE VEMMSRKNHV  120
VVRQCLVGVE IVFSSRCCGG QPRFSSVLQV LSEHGLCLLN SISSIVDDRL IYTIQAEVND  180
MALMIDLAEL EKRLIRMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2148s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0109520.0BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880438.11e-140transcription factor bHLH36
SwissprotQ9FLI11e-116BH036_ARATH; Transcription factor bHLH36
TrEMBLA0A1P8BCN71e-120A0A1P8BCN7_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
TrEMBLD7MRI81e-120D7MRI8_ARALL; Basix helix-loop-helix family protein
STRINGBostr.15774s0324.1.p1e-125(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-119bHLH family protein