PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21527s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 212aa    MW: 24068.5 Da    PI: 9.8272
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21527s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.31e-082879150
                   NAM  1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkk 50
                          lppG++  P+d+el+++yLk+   ++k    ++v i+ v+iyk++ ++Lp+k
  Araha.21527s0003.1.p 28 LPPGYKLVPSDKELIMHYLKPFSPERKnYASFNVpIHYVNIYKSNLENLPEK 79
                          79*******************98777754555777**************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-1816132IPR003441NAC domain
PfamPF023651.8E-529128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MQPPSEIPSS SSSAADNFSS PSTISYLLPP GYKLVPSDKE LIMHYLKPFS PERKNYASFN  60
VPIHYVNIYK SNLENLPEKG GDNGRYRNTT LGAKKINAGE SVVGYKTSLE SYVRKHPNGV  120
KTDWLLHDLF ESLGDNYMFL RSQIYLTPKA AKKKKAEEKK NEKLKKEVIL KEEAEKLEPD  180
QTQPQPQPQP RSRVLFLIAW MTFLSESAIR F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.21527s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431407.11e-43PREDICTED: NAC transcription factor 29-like
TrEMBLD7LVH15e-39D7LVH1_ARALL; Uncharacterized protein
STRINGBostr.18351s0021.1.p5e-53(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.12e-31NAC domain containing protein 64