PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2152s0023.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 431aa    MW: 49818.6 Da    PI: 8.9054
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2152s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00126487123
                         EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                         ++C+ Cgk F+    + +H  + H
  Araha.2152s0023.1.p 64 FRCEECGKGFRYEKCFANHKAVmH 87
                         89*****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0686487IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456492IPR007087Zinc finger, C2H2
PROSITE patternPS0002806687IPR007087Zinc finger, C2H2
SuperFamilySSF576673.53E-5359386No hitNo description
PROSITE profilePS501579.993360387IPR007087Zinc finger, C2H2
SMARTSM003550.053360382IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-6360382IPR007087Zinc finger, C2H2
PROSITE patternPS000280362382IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEEEHQDLHK PIYGALRKLK ITQSRKETEE SMNQQRDFTC YYGLRENPKK KIQESPEPMK  60
KILFRCEECG KGFRYEKCFA NHKAVMHLST NQKVCEESMM SLYRSLSFVR KKKRSRLIRY  120
KKTSFSCSFT TFHEPRSVFA ANDAELEVAD CLILLSESTP KFVDGLKLLA EAVHVTYETP  180
KSSYDFGCLR NKKPRKGGEF EYGFFSNEQR FMEEGFSSYG TSKEPASFWR DDNRLDQQKR  240
RKAGEFETGF LSNEHRMLKE EITTPVTFKG PASFLGHKFV LDQQKLRNGG GFGSEFLSNE  300
QKVMGGAWKE PEIELEQRKL RKAGDFETGY YRTELGVGAM ECSDSDTEMI TESDKKNVEH  360
QCRLCNKIFS SYQALGGHQT IHRMSKCKFK KNCREESVEP EDESMRCSVT KRRRHTSVAS  420
VQGISARSML *
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2152s0023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873727.10.0uncharacterized protein LOC9309795
TrEMBLD7M7D00.0D7M7D0_ARALL; Uncharacterized protein
STRINGscaffold_601577.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.10.0C2H2 family protein