PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2176s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 452aa    MW: 49569 Da    PI: 6.794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2176s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.5e-053323701255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Araha.2176s0001.1.p 332 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 370
                          7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.827320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.04E-5330374No hitNo description
SuperFamilySSF474596.67E-11330383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-8334377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDSANLHQLQ DQLQLVGSSS SSSSLDNNSD PSCYGASSAH QWSPGGISLN SVSLSHNYNN  60
EMLNTRDHNK NNNTSECMSL STIRNHSLIQ QQDFPLQWPH DQSSYHHHEG LLKIKEELSS  120
STISDHQEGI SKFTDMLNSP VITNYLKINE HKDYTEKLLL KSISSGFPIN RDYCSSLPSS  180
SSSSSPSSQS HRGNFSQIYP SVNISSLSES RKMSMDDMSN IPRPFDMNMQ VFDGRLFEGN  240
VLVPPLNSQE ISNLGMSRGS FPPFGLPFHH HLQQTLPHPS SSPTHQMEMF SNEPQTSEGK  300
RHNFLMATKA GENASKKPRV ESRSSCPPFK VRKEKLGDRI AALQQLVSPF GKTDTASVLM  360
EAIGYIKFLQ SQIETLSVPY MRASRNRTGK ASQLGSQSQE GDEEETRDLR SRGLCLVPLS  420
CMTYVTGDGG DGGGGVGSGF WPTPPGFGGG T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2176s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0123750.0AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870503.10.0transcription factor bHLH110
SwissprotQ9SFZ30.0BH110_ARATH; Transcription factor bHLH110
TrEMBLD7KBT30.0D7KBT3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2924__AT1G27660.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]