PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21828s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 476aa    MW: 53248.6 Da    PI: 6.7356
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21828s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44e-14214273155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ ++ Aa+a++ a++k++g
  Araha.21828s0004.1.p 214 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDRAARAYDLAALKYWG 273
                           57*******************666664478446**********99*************98 PP
2AP249.21.3e-15318367355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Araha.21828s0004.1.p 318 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 367
                           9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-17214282IPR016177DNA-binding domain
CDDcd000187.74E-22214283No hitNo description
PfamPF008473.8E-11214273IPR001471AP2/ERF domain
PROSITE profilePS5103219.058215281IPR001471AP2/ERF domain
SMARTSM003802.2E-27215287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-15215282IPR001471AP2/ERF domain
PRINTSPR003673.7E-6216227IPR001471AP2/ERF domain
CDDcd000187.97E-11316375No hitNo description
SuperFamilySSF541719.81E-18316376IPR016177DNA-binding domain
PROSITE profilePS5103219.269317375IPR001471AP2/ERF domain
SMARTSM003803.3E-30317381IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18317375IPR001471AP2/ERF domain
PfamPF008476.2E-10318367IPR001471AP2/ERF domain
PRINTSPR003673.7E-6357377IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MTTNWLTFSL SPMEMLKSPP DQSHFSSYDA SSTPYLIDNF YAFKEEADIE AAASMADSTT  60
LSTFFDSQIH SQTQIPKLED FLGDSFVRYS DNQTETQDSS SLTRFYDLRH NNVSGGVTGF  120
FSDHHQHDFK TINSGSEIVD DSTTSNIGGT HLSSHVVESS TTAELGFNGC TTGGVSCNNG  180
ERGENSNKKK TVSKKETLDD SKKKTVETLG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE  240
GQARKGRQVY LGGYDKEDRA ARAYDLAALK YWGPTATTNF PVASYSKELE EMNHMTKLEF  300
IASLRRKSSG FSRGASMYRG VTRHHQQGRW QARIGRVAGN KDLYLGTFAT EEEAAEAYDI  360
AAIKFRGINA VTNFEMNRYD VEAVMKSSFP VGGAAAKRHK LSLESPSPSS SDHNLQQQHL  420
LPSSDLNPNS IPCGIPFESS VLYHHQNFFQ HYPSDSTVQV PMNQAEFFLW PNQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00589DAPTransfer from AT5G65510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.21828s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608870.0AY560887.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865692.10.0AP2-like ethylene-responsive transcription factor AIL7 isoform X1
RefseqXP_020865696.10.0AP2-like ethylene-responsive transcription factor AIL7 isoform X1
SwissprotQ6J9N80.0AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLD7MTZ10.0D7MTZ1_ARALL; Predicted protein
STRINGBostr.0568s0236.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.10.0AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]