PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21986s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 787aa    MW: 90349.6 Da    PI: 7.1213
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21986s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.76e-2156130189
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fYn+YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC+a ++v+++++gkw+++++++eHnHel
  Araha.21986s0003.1.p  56 EFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 130
                           6***************************************876..............589***************************98 PP
2FAR167.63.1e-21223299191
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCs+eg+++++              r+gC a +++k++++g w v++l+++HnH+l
  Araha.21986s0003.1.p 223 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDL 297
                           6***************************************9994..............799***************************9 PP

                  FAR1  90 ap 91 
                            p
  Araha.21986s0003.1.p 298 EP 299
                           75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-1656130IPR004330FAR1 DNA binding domain
PfamPF031011.0E-16223299IPR004330FAR1 DNA binding domain
PfamPF105511.1E-24398490IPR018289MULE transposase domain
PROSITE profilePS5096610.361672708IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-7680705IPR007527Zinc finger, SWIM-type
SMARTSM005753.1E-8683710IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MESADTELTS FNNMVAKAYP VRILHHNNGI SEDEEGGSGV EPYVGLEFDT AEEAREFYNA  60
YAARTGFKVR TGQLYRSRTD GTVSSRRFVC SKEGFQLNSR TGCTAFIRVQ RRDTGKWVLD  120
QIQKEHNHEL GGEGSVEETT PRPSRAPAPT KLGVTVNPHR PKMKVVDESD RETRSCPGGF  180
KRFKGGGEGE VSDDHHQTQQ PKAVTGTEPY AGLEFGSANE ACQFYQAYAE VVGFRVRIGQ  240
LFRSKVDGSI TSRRFVCSRE GFQHPSRMGC GAYMRIKRQD SGGWIVDRLN KDHNHDLEPG  300
KKNDAGMKKI PDDGTGGLDS VDLIELNDFG NNHIKKTREN RIGKEWYPLL LDYFQSRQTE  360
DMGFFYAVEL DVNNGSCMSI FWADSRARFA CSQFGDSVVF DTSYRKGSYS VPFATIIGFN  420
HHRQPVLLGC AMVADESKEA FLWLFQTWLR AMSGRRPRSI VADQDLPIQQ ALVQVFPGAH  480
HRYSAWQIRE KERENLIPFP SEFKYEYEKC IYQTQTTVEF DSVWNALINK YGLRDDVWLR  540
EIYEQRENWV PAYLRASFFA GIPINGTIEP FFGASLDALT PLREFISRYE QALEQRREEE  600
RKEDFNSYNL QPFLQTKEPV EEQCRRLYTL TVFRIFQNEL VQSYNYLCLK TYEEGAISRF  660
LVRKCGNESE KHAVTFSASN LNSSCSCQMF EHEGLLCRHI LKVFNLLDIR ELPSRYILHR  720
WTKNAEFGFV RDMESGVSAQ DLKALMVWSL REAASKYIEF GTSSLEKYKL AYEIMREGGK  780
KLCWQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.21986s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686550.0AC068655.3 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876091.10.0protein FAR1-RELATED SEQUENCE 12 isoform X1
RefseqXP_020876092.10.0protein FAR1-RELATED SEQUENCE 12 isoform X1
SwissprotQ3E7I50.0FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A178UJZ00.0A0A178UJZ0_ARATH; FRS12
STRINGAT5G18960.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.10.0FAR1-related sequence 12
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]