PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2214s0007.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GRF

Protein Properties

Length: 435aa MW: 49196.2 Da PI: 8.7117

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2214s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.1	3.1e-23	89	133	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++ep rCrRtDGKkWRCs++vl +k+CErH+hrgr+rsrk +e+ Araha.2214s0007.1.p 89 EPEPTRCRRTDGKKWRCSNTVLLYEKYCERHMHRGRKRSRKLVES 133 69***************************************9986 PP
2	WRC	67.9	1.3e-21	311	350	1	40
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 d+epgrCrRtDGKkWRCs+++l+g+k+C++H+hrg +++ Araha.2214s0007.1.p 311 DNEPGRCRRTDGKKWRCSKDALSGQKYCDKHMHRGIKKKH 350 68*********************************88764 PP
3	QLQ	42.1	2.7e-15	24	59	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++ aaQl+++++Q l+y+y+ a++ vP++L+++i++ Araha.2214s0007.1.p 24 WMKAAQLMEFRMQTLVYRYIEAGLRVPHHLVVPIWN 59 789********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.8E-7	23	59	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	16.022	24	59	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.4E-8	26	58	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.721	89	133	IPR014977	WRC domain
Pfam	PF08879	2.1E-19	90	132	IPR014977	WRC domain
PROSITE profile	PS51667	21.849	311	355	IPR014977	WRC domain
Pfam	PF08879	6.2E-18	313	350	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MQMQSPKMEQ EDVEEERMRK KWPWMKAAQL MEFRMQTLVY RYIEAGLRVP HHLVVPIWNS 60 LALSSSSNYN YHSSSLLSNK GVNHIDAAEP EPTRCRRTDG KKWRCSNTVL LYEKYCERHM 120 HRGRKRSRKL VESSYEVASS STKHDNTYGL DMNNESQSFL HGTISGSSNA QVVTIASLPS 180 ARACDDVIRP SLVISESTNK SVSHGYRSRR NMEMSCDDFI SKKDSSMCLR IVPLQGDESL 240 PSVQKFFPEV SDNSLEAAKF SSNRKNDIIA RSREWKNMNV VNGGLFHGSH FSPDTVLQER 300 GGFRLQRVDT DNEPGRCRRT DGKKWRCSKD ALSGQKYCDK HMHRGIKKKH PVDTTNSHEH 360 SGFSPLTVKT AARSVSCKDG DDQKLSVSVM GIPLPRVSDE KSTCSYSTDT TITDTALRGE 420 EDDEEYLSLF SSGV*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MQMQSPKMEQ EDVEEERMRK KWPWMKAAQL MEFRMQTLVY RYIEAGLRVP HHLVVPIWNS  60
LALSSSSNYN YHSSSLLSNK GVNHIDAAEP EPTRCRRTDG KKWRCSNTVL LYEKYCERHM  120
HRGRKRSRKL VESSYEVASS STKHDNTYGL DMNNESQSFL HGTISGSSNA QVVTIASLPS  180
ARACDDVIRP SLVISESTNK SVSHGYRSRR NMEMSCDDFI SKKDSSMCLR IVPLQGDESL  240
PSVQKFFPEV SDNSLEAAKF SSNRKNDIIA RSREWKNMNV VNGGLFHGSH FSPDTVLQER  300
GGFRLQRVDT DNEPGRCRRT DGKKWRCSKD ALSGQKYCDK HMHRGIKKKH PVDTTNSHEH  360
SGFSPLTVKT AARSVSCKDG DDQKLSVSVM GIPLPRVSDE KSTCSYSTDT TITDTALRGE  420
EDDEEYLSLF SSGV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	129	GRKRSRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:21036927}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2214s0007.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074647	0.0	AY074647.1 Arabidopsis thaliana At2g45480/F4L23.1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880181.1	0.0	growth-regulating factor 9 isoform X1
Swissprot	Q8S9M3	0.0	GRF9_ARATH; Growth-regulating factor 9
TrEMBL	D7LCJ7	0.0	D7LCJ7_ARALL; At2g45480/F4L23.1
STRING	fgenesh1_pm.C_scaffold_4002259	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13760	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	0.0	growth-regulating factor 9

Link Out ? help Back to Top
Phytozome	Araha.2214s0007.1.p

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]