PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.22315s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 364aa    MW: 39165.4 Da    PI: 9.0636
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.22315s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09189237355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Araha.22315s0001.1.p 189 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 237
                           58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.91E-11184241No hitNo description
SuperFamilySSF474591.7E-17184255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.478186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17187254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6189237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAQFPADSGF IERAARFSLF SGGNFSDMVN QPLGNPESIG LFLQGGGTMQ GLCQSNEHNV  60
GDPHNDVSTA VKNPTVRSSE QAKPNVPGSG NVSEDTQSSG GNGRKGRETS SNTKKRKRNG  120
QNSEAAQSHR SQQSEEEPDN NGDKKLNSEQ SPNSPGNKTN SGKQQGKQSS DPPKDGYIHV  180
RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCNKVT GKAVMLDEII NYVQSLQRQV  240
EFLSMKLATV NPQMDFNLEG LLAKDALQLR AGSSSTTPFP PNMSMPYPPL PHGFMQQTLS  300
SIGRTISSPL SSMNGGFKRQ ETNGWEGDLQ NVIHINYGAG DVTPDPQAAA TASLPAANMK  360
VEP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.22315s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3189370.0AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891421.10.0transcription factor bHLH49
RefseqXP_020891422.10.0transcription factor bHLH49
SwissprotQ9CAA90.0BH049_ARATH; Transcription factor bHLH49
TrEMBLC0Z2X30.0C0Z2X3_ARATH; AT1G68920 protein
STRINGfgenesh2_kg.2__1151__AT1G68920.30.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.30.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]