PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.22681s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 79aa    MW: 9191.8 Da    PI: 8.6194
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.22681s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH51.31.8e-16327226
                          -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                          ktelC+ +++tG C+yGd+C+FaHg
  Araha.22681s0001.1.p  3 KTELCNKWQETGACPYGDNCQFAHG 27
                          9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.939129IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-8128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-12233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-19234IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-13327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-103570IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-133568IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9723967IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-53966IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MMKTELCNKW QETGACPYGD NCQFAHGIGE LRPVIRHPRY KTEVCRMIVT GAMCPYGHRC  60
HFRHSLTDQE RMMMMLTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-24368570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.22681s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132881e-103AC013288.7 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence.
GenBankCP0026841e-103CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888548.14e-55zinc finger CCCH domain-containing protein 14 isoform X1
SwissprotQ9C9N32e-50C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLD7KUE49e-54D7KUE4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__907__AT1G66810.12e-54(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-52C3H family protein