PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2271s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 492aa    MW: 55855 Da    PI: 8.8967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2271s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-1965157397
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                           +++++++lk++ +++pk+fa ++ +   ++++++l++e+g+sW++ l+  + + gr+ +++GW++F+ ang k gD++ Fkl++ +e++
  Araha.2271s0001.1.p  65 VATVTASNLKRDTVYIPKDFALSNRLM--NKFQIVLMNEEGESWKIDLRReTYSHGRFHMRRGWRSFCIANGKKPGDSFAFKLVK-NEET 151
                          567899******************766..4578***************885666666**************************99.5555 PP

                          .EEEEE CS
                   B3  92 lvvkvf 97 
                          +v+++f
  Araha.2271s0001.1.p 152 PVLQLF 157
                          888876 PP
2B360.92.1e-19197280489
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          +++++++l+++rl++pk+f+ ++g+   +++++ l++e+g+sW++ ++++  sgr+++ +GW++F+ ang k gD + Fkl++++e
  Araha.2271s0001.1.p 197 ATVTASNLSRDRLYIPKTFIMSNGLL--KKFQMCLMNEEGESWTIDVKHEAPSGRFLMIRGWRSFCVANGKKPGDLFKFKLVQNEE 280
                          567999*****************998..4568*************************************************99755 PP
3B343.55.6e-144054901099
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           + s+ l lp +f++ +g++k++  ++t+ d+   +W   l ++k++ ++ l++G k+F++ ng+k ++++v++l++ +++ +++k+++k
  Araha.2271s0001.1.p 405 LTPSSKLNLPLEFMKGNGINKAG--KITMLDRYDAKWPTSLLMDKRG-TMSLGRGSKGFCEVNGVKMNESFVLELIW-EDTVPHLKFCSK 490
                          55567799**********99887..7***************766665.678**************************.78889***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-2061154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-1962157IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.39763160IPR003340B3 DNA binding domain
CDDcd100174.30E-1663158No hitNo description
SMARTSM010198.1E-2964160IPR003340B3 DNA binding domain
PfamPF023623.8E-1864157IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-21189284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-21189288IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.86194290IPR003340B3 DNA binding domain
CDDcd100178.16E-18194279No hitNo description
SMARTSM010191.6E-28195290IPR003340B3 DNA binding domain
PfamPF023623.7E-18197280IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-15393489IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-15395488IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.107396491IPR003340B3 DNA binding domain
CDDcd100175.72E-11399489No hitNo description
SMARTSM010198.5E-24400491IPR003340B3 DNA binding domain
PfamPF023622.3E-12405490IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDSLDKDNSR LLLLSSNRGK QRRLGFLFFA EEEKLCDTEK VSRKKNSLKR EADSAPEHSL  60
SSCFVATVTA SNLKRDTVYI PKDFALSNRL MNKFQIVLMN EEGESWKIDL RRETYSHGRF  120
HMRRGWRSFC IANGKKPGDS FAFKLVKNEE TPVLQLFPLT IEDLDKLHST IDTESVPRQK  180
SRKVEADPSP DTSSFVATVT ASNLSRDRLY IPKTFIMSNG LLKKFQMCLM NEEGESWTID  240
VKHEAPSGRF LMIRGWRSFC VANGKKPGDL FKFKLVQNEE IPLLQLVPLT SEDLRKLETT  300
LLKEISITEA VSSSVDPSND TRQGKCLEAT KKEFLVTEAT EKEFLGVEVY RNDSFKASEK  360
DSLPFAEPIN EHIRQGQCSK AIKKEYVSTE ENNSTSQNRF VTLTLTPSSK LNLPLEFMKG  420
NGINKAGKIT MLDRYDAKWP TSLLMDKRGT MSLGRGSKGF CEVNGVKMNE SFVLELIWED  480
TVPHLKFCSK V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2271s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072666e-98AC007266.5 Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete sequence.
GenBankCP0026856e-98CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880610.10.0B3 domain-containing protein REM10 isoform X3
SwissprotP0DH850.0REM10_ARATH; B3 domain-containing protein REM10
TrEMBLD7LIC10.0D7LIC1_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pg.C_scaffold_40003920.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]