PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2271s0001.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 378aa    MW: 43089.6 Da    PI: 9.1826
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2271s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.5e-144673497
                         SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 34 ktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         ++++l++e+g+sW++ l+  + + gr+ +++GW++F+ ang k gD++ Fkl++ +e+++v+++f
  Araha.2271s0001.2.p  4 FQIVLMNEEGESWKIDLRReTYSHGRFHMRRGWRSFCIANGKKPGDSFAFKLVK-NEETPVLQLF 67
                         679**************885666666**************************99.5555888876 PP
2B361.51.4e-19101184489
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          +++++++l+++rl++pk+f+ ++g+   +++++ l++e+g+sW++ ++++  sgr+++ +GW++F+ ang k gD + Fkl++++e
  Araha.2271s0001.2.p 101 ATVTASNLSRDRLYIPKTFIMSNGLL--KKFQMCLMNEEGESWTIDVKHEAPSGRFLMIRGWRSFCVANGKKPGDLFKFKLVQNEE 184
                          567999*****************998..4568*************************************************99755 PP
3B344.13.6e-142913761099
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           + s+ l lp +f++ +g++k++  ++t+ d+   +W   l ++k++ ++ l++G k+F++ ng+k ++++v++l++ +++ +++k+++k
  Araha.2271s0001.2.p 291 LTPSSKLNLPLEFMKGNGINKAG--KITMLDRYDAKWPTSLLMDKRG-TMSLGRGSKGFCEVNGVKMNESFVLELIW-EDTVPHLKFCSK 376
                          55567799**********99887..7***************766665.678**************************.78889***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.085170IPR003340B3 DNA binding domain
PfamPF023622.0E-12467IPR003340B3 DNA binding domain
SMARTSM010196.5E-8470IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-12564IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-12567IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-10568No hitNo description
Gene3DG3DSA:2.40.330.103.5E-2193188IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-2193192IPR015300DNA-binding pseudobarrel domain
CDDcd100174.78E-1898183No hitNo description
PROSITE profilePS5086313.8698194IPR003340B3 DNA binding domain
SMARTSM010191.6E-2899194IPR003340B3 DNA binding domain
PfamPF023622.2E-18101185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-15279375IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-15281374IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.107282377IPR003340B3 DNA binding domain
CDDcd100174.53E-11285375No hitNo description
SMARTSM010198.5E-24286377IPR003340B3 DNA binding domain
PfamPF023621.5E-12291376IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MNKFQIVLMN EEGESWKIDL RRETYSHGRF HMRRGWRSFC IANGKKPGDS FAFKLVKNEE  60
TPVLQLFPLT IEDLDKLQSV PRQKSRKVEA DPSPDTSSFV ATVTASNLSR DRLYIPKTFI  120
MSNGLLKKFQ MCLMNEEGES WTIDVKHEAP SGRFLMIRGW RSFCVANGKK PGDLFKFKLV  180
QNEEIPLLQL VPLTSEDLRK LDPSNDTRQG KCLEATKKEF LVTEATEKEF LGVEVYRNDS  240
FKASEKDSLP FAEPINEHIR QGQCSKAIKK EYVSTEENNS TSQNRFVTLT LTPSSKLNLP  300
LEFMKGNGIN KAGKITMLDR YDAKWPTSLL MDKRGTMSLG RGSKGFCEVN GVKMNESFVL  360
ELIWEDTVPH LKFCSKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2271s0001.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072664e-98AC007266.5 Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete sequence.
GenBankCP0026854e-98CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880610.10.0B3 domain-containing protein REM10 isoform X3
SwissprotP0DH850.0REM10_ARATH; B3 domain-containing protein REM10
TrEMBLD7LIC10.0D7LIC1_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pg.C_scaffold_40003920.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]