PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.22728s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 113aa    MW: 13043.1 Da    PI: 8.1124
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.22728s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.5e-17691196
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                          ffk l     + s+ l++p  f+ ++ +g + e+kt  l++  s  +Wevk+  ++++    lt+GWkeF+ a++L+ gD+vvF+ +++++
  Araha.22728s0004.1.p  6 FFKPL--LPGFHSH-LTIPMAFFLKNiEGRH-EQKTAELRSdASKITWEVKI--DGQR----LTDGWKEFALAHDLRIGDIVVFRQERDMS 86
                          66777..6667777.*******999975554.55789998868889******..9888....***********************877788 PP

                          E..EEEE CS
                    B3 90 felvvkv 96
                          f  +v++
  Araha.22728s0004.1.p 87 F--HVTM 91
                          8..7766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.97395IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-243107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-214101IPR015300DNA-binding pseudobarrel domain
CDDcd100179.91E-17592No hitNo description
SMARTSM010194.0E-22695IPR003340B3 DNA binding domain
PfamPF023622.2E-121489IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MAKQHFFKPL LPGFHSHLTI PMAFFLKNIE GRHEQKTAEL RSDASKITWE VKIDGQRLTD  60
GWKEFALAHD LRIGDIVVFR QERDMSFHVT MLGPSCCEIQ YGLCLNNQKN NLG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.22728s0004.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175141e-129AK117514.1 Arabidopsis thaliana At2g24650 mRNA for unknown protein, complete cds, clone: RAFL17-15-N14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884495.12e-72putative B3 domain-containing protein REM15
RefseqXP_020885365.14e-72B3 domain-containing protein REM14 isoform X1
SwissprotQ8GYM41e-68REM14_ARATH; B3 domain-containing protein REM14
TrEMBLD7LIW05e-70D7LIW0_ARALL; Uncharacterized protein
TrEMBLD7LIX67e-70D7LIX6_ARALL; Uncharacterized protein
STRINGscaffold_400548.18e-71(Arabidopsis lyrata)
STRINGscaffold_400563.11e-70(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.14e-71B3 family protein