PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.22931s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 192aa    MW: 21512.4 Da    PI: 4.9952
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.22931s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.45.3e-4334132199
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrr+Ca+ Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeAear+rdPvyG++g i +lq+q+++
  Araha.22931s0001.1.p  34 PCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGSIYHLQRQVSE 122
                           7**************************************************************************************** PP

                DUF260  90 lkaelallke 99 
                           l+a+la+ + 
  Araha.22931s0001.1.p 123 LQAQLAKSQV 132
                           *****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.23833134IPR004883Lateral organ boundaries, LOB
PfamPF031957.5E-4334130IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MESKSDASAA TTPIISSSSS SPPPPFSPRV VLTPCAACKI LRRRCAERCV LAPYFPPTDP  60
AKFTIAHRVF GASNIIKFLQ ELPESQRTDA VNSMVYEAEA RIRDPVYGCA GSIYHLQRQV  120
SELQAQLAKS QVEMVNMQFQ RSNLLELLYK MDQQNQEQDN ILSFESNDLG FLEDNSNTNS  180
SMLWWDPLWT C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-413313510112LOB family transfactor Ramosa2.1
5ly0_B1e-413313510112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.22931s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738410.0AB473841.1 Arabidopsis thaliana ASL8 mRNA for ASYMMETRIC LEAVES2-like 8 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867785.11e-124LOB domain-containing protein 1
RefseqXP_020867786.11e-124LOB domain-containing protein 1
RefseqXP_020867787.11e-124LOB domain-containing protein 1
SwissprotQ9LQR01e-117LBD1_ARATH; LOB domain-containing protein 1
TrEMBLD7KHW81e-123D7KHW8_ARALL; LOB domain protein 1
STRINGfgenesh1_pm.C_scaffold_10006231e-123(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-116LOB domain-containing protein 1