PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23046s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 25008.4 Da    PI: 10.6443
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23046s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.6e-28959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien + rqvtfskRr g++KKA+ELSvLCda+va +ifs++g+lye++s
  Araha.23046s0008.1.p  9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQKGRLYEFAS 59
                          68***********************************************86 PP
2K-box63.39.2e-22851721198
                 K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           e+  + l++e+  + k+ie L+  +R+++G++L s+s+keLq++ +q+eksl  +R +K +l+ +++e+l+ ke+el++e  +L +++
  Araha.23046s0008.1.p  85 EQYVQGLKKEMVTMVKKIEVLEVHNRKMMGQSLASCSVKELQEIATQIEKSLHIVRLRKAKLYEDELEKLKAKERELKDERVRLCRRV 172
                           56678999**************999*******************************************************99998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.357161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-39160IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-29323IPR002100Transcription factor, MADS-box
CDDcd002651.26E-38373No hitNo description
SuperFamilySSF554559.68E-31387IPR002100Transcription factor, MADS-box
PfamPF003193.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.62788178IPR002487Transcription factor, K-box
PfamPF014861.3E-2189172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS  60
DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK KIEVLEVHNR KMMGQSLASC  120
SVKELQEIAT QIEKSLHIVR LRKAKLYEDE LEKLKAKERE LKDERVRLCR RVGERPMGMP  180
SGSKRMWKRI YLLDFRRADH KNRPWSLNLI F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-18172172Myocyte-specific enhancer factor 2B
1tqe_Q1e-18172172Myocyte-specific enhancer factor 2B
1tqe_R1e-18172172Myocyte-specific enhancer factor 2B
1tqe_S1e-18172172Myocyte-specific enhancer factor 2B
6c9l_A1e-18172172Myocyte-specific enhancer factor 2B
6c9l_B1e-18172172Myocyte-specific enhancer factor 2B
6c9l_C1e-18172172Myocyte-specific enhancer factor 2B
6c9l_D1e-18172172Myocyte-specific enhancer factor 2B
6c9l_E1e-18172172Myocyte-specific enhancer factor 2B
6c9l_F1e-18172172Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.23046s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4470610.0DQ447061.1 Arabidopsis thaliana clone pENTR221-At5g51860 MADS-box protein (At5g51860) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865878.11e-127MADS-box protein AGL72
RefseqXP_020872015.11e-127MADS-box protein AGL72
SwissprotQ9FLH51e-123AGL72_ARATH; MADS-box protein AGL72
TrEMBLD7MRJ71e-126D7MRJ7_ARALL; MADS-box protein
STRINGscaffold_801621.11e-127(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.21e-109MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]