PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.23127s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

WRKY

Protein Properties

Length: 264aa MW: 30025.5 Da PI: 6.6197

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.23127s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	86.4	2.6e-27	184	243	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-S.SSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversa.edpkvveitYegeHnhe 59 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ e+++++ +tYeg+H+h+ Araha.23127s0001.1.p 184 NDGCQWRKYGQKTAKTNPLPRAYYRCSMSsNCPVRKQVQRCGeEETSAFMTTYEGNHDHP 243 8*************************99******96157889*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-28	168	245	IPR003657	WRKY domain
PROSITE profile	PS50811	24.202	178	245	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-24	179	245	IPR003657	WRKY domain
SMART	SM00774	2.4E-32	183	244	IPR003657	WRKY domain
Pfam	PF03106	3.6E-25	184	243	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MCLGYLQEEE ELDATKAKVE KVREENEKLK LLLSTILNNY NSLQMHVSNV LRQQQRASME 60 LDQDKDNDFY VDISLRLGRS EQKISKNEEK VDKISNENKE ESKDKRSALG SGFQIQSYEA 120 SKLDDLCRQV KNANAENNCV SSRKDVKTVR NENHHQDVLE EHEQAGLKKT RVCVKASCED 180 PSINDGCQWR KYGQKTAKTN PLPRAYYRCS MSSNCPVRKQ VQRCGEEETS AFMTTYEGNH 240 DHPLPMEATH MAAGTSAAAS LLQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	170	245	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.23127s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493530	0.0	AB493530.1 Arabidopsis thaliana At1g69810 mRNA for hypothetical protein, partial cds, clone: RAAt1g69810.
GenBank	AF404859	0.0	AF404859.1 Arabidopsis thaliana WRKY transcription factor 36 (WRKY36) mRNA, complete cds.
GenBank	BT029234	0.0	BT029234.1 Arabidopsis thaliana At1g69810 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002888739.1	1e-177	probable WRKY transcription factor 36
Swissprot	Q9CAR4	1e-162	WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBL	D7KXJ9	1e-175	D7KXJ9_ARALL; WRKY DNA-binding protein 36
STRING	fgenesh1_pg.C_scaffold_2001315	1e-176	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13913	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69810.1	1e-155	WRKY DNA-binding protein 36

Link Out ? help Back to Top
Phytozome	Araha.23127s0001.1.p

Publications ? help Back to Top
Yang Y, et al. UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis. Nat Plants, 2018. 4(2): p. 98-107 [PMID:29379156]